Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01060 ATGGGAAGGAGAAGAGAGCGGCGCCTGGCAGCTCTCAGTAACGCCGGCCGCCGTGTCAAACTCGATCTTTTCGCCGAGCCCTCCGGAGATTTAGATGGCTCTGATGTACAAGAAGAAGTTGGAGGGGATATAGATTCAAGAGAGACGACCAAGTTACCGAAATCAGCATCCTCTTCAGGCCACCAAGCACAAAATCCCTTGCTGTTACTTGAGCAATATAGTGACGATGAAGTAGATGAGGACTTGGATACAAATTCAGATCATGATGGGCAAGATGCTTTGTTACCTGACCGAACTGATGAGGTTTCTGCTGAGGGATGTGAGAAAATGGATGCAAAGGTCAGTGAAAATCTCATCACTCAAAAGGCGGTCCAAGAGGAATCAGAGCGGGATTCTGTTGAATTTTCTGAGAACCTAGAGAGCAAAGATGAAGGAAAAACTGATACTAATAACTTGGGATATTTAAGCAAGGAAACTGATTTGGTTCAAACATCTGTATCGGCTTCCTCTGATGTACAAGTCGGAGGGGATGTTATTTCAGGATGGAGGATTGTTATGCACGAGGAGAGCCATAATTATTATTATTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTACCTGATGTTGTTTTGGCTCAGGCTCAGCCTACTCAATCGACCACTGATATTAAAACTTCTCCTACACAATTTCCAGAGAACGTTACAGTCTTTAAACAAGAATCTTGCTTAGCTAATGGTGGGAAGTTAGATTTGTTTTCAGCAGAAAGCACAGGTTACAAGAATGGTGCTCCAGTATGTGCAAGTCAGGGTTCTGAGGTTGACCAAAGCTATGCTCTCTTCAGCACTTGTTCAAATGATGTGAATATAGCAAAAGCTGGTTCCGAGATCTATGTTGATTACACGATGACTCATGAAGAATCGAAGTCAGGGTTGGATCTTCCTTCGCATCTTCTGAACTGGAGTGCTAGCCTGTTAGAGAGATTGAAATCATTACAAAAGTCTGGGGGTCATGAATGGACATCAGAGTACATACAGGAAACTCAGATAAGACTCGAAGATTTGAAGTCGCTGATGCCCTATAAGACATCTTTGCTTCCATTCTGGGAACACTCAGCAGGGAAGCTTAAACAGATTGAAGATGACATTAACAAAGAAATTTATCAGACTGCTGCTGTATCGTCGCAATTGGGTGAAGCCAAGGCTACTGATAGTCCAAACATTGTAAGATCGAACGTTGGGTCTGAAGTCGAGAGAGTGGCTTGTGGTGGTTCTGCTTCGGAGCATTCTCATTTGCGTACTGATTCCGCTTTGACAATCCAAGGGGATCAAAGCCAATTAACTGTCATTGCAAATGGAGAGAATATTTCATCGTCTAATGCAATCGAACACTTTGGAAACACTACTGCTGTGATTGAGCAGGTAAGTGAAGTTGTAATTGACGAAATGGCTTCCAAGAGCGGTGTACATTCTGTGGAAGATGTTGACATGGAGGTAGATATGGAAGTTGAAGATGCGAGTTCTGCAGGTAACTTGATGGTGACTGGTACGTCAGATATGTCCGTTGCTAAGTCGTTTACTTCCTCTGAGCAACCGCTTCTGCCAGATCCACAAGCCCAGCCAAATCTTTCTTGTGGATATGAATCCATAGTGCCAGAGGATAGCTCTATGGTGCCACCACCACCAGATGAGGAATGGATCCCCCCTCCACCACCTGATAATGAAGATATTCCTCCACCTCCACCTGATGAGCCAGCTGAACCATTTTATCCTATGCCTCCATCTTATACCCAACTTGGCCAGCCTCCTTGTTACACCGAACCATATCAAGTGTCTTATCCTGATTCTAGTATTAAGTATTATACACATCCTGTACCTGAAGCCATTCTTAGTGCAAACTTTTATGGACATCCAGAAGCATGTAACGTTGTTTTGGCTCAAGCACCATTTTACTATGAGGCAGTTCCCAATTCACATACTGATTCTTCTCCTGTAGTTGTAAATGGTGTTGTGCCTGAAAGTTACGGTATTCTTCAAGACACAACAACCTCTCTTCCCGTCTTTAGCACCGCAGAGCCTTCTCAGTTGCATGTTGATGCCTCATCTGTGAGATTTGAGCCTTCTTCCTCTATTCAATATAGATCTTCTGATATAGAAAATATGAATACTGCTTCTTCCACGGATGAAATTGACAAGGGACGAAAAGAGACTGCATCAGTCTCCTTCCGATCTACTTCGGGCTCACCAACTAATGATGTTCTGCCTACATCTAAAGCTGTTACTGATTCTTCGGCTGTTGCTAATGCATCTACAGTTTCCAAGGTTCAACCAAAAGCTCCGCGCAGTAAAAAGCAGACAGTAACGGTTGCCCCTTCCTTGAGATCTAATAAGAAGGTTTCCAGTTTGTTGGACAAGTGGAAAGCCGCTAAGGAAGAACTTGAAGATGAGGAAGAACCCGAAAATGCGTACGAGATTTTAGAGAGGAAACGAGACCGGGAAATAAAGGAATGGCATGCACAGCAGGTTTCCAGTGGGGATGCAAAAGAAAACGCTAACTTTCAGCCTCTTGGGGGTGATTGGCGTGAGCGGGTAAAGCGAAGGAGAGCTCAATCGTCGAGCAAAGTTACTCAATCTCCAGCTGAAGCATCCGCGGATGGAAACCAGCAGCCTGACCTGGCACAAATCTCAAAAGATCTCCCCTCAGGGTGGCAGGCATATTGGGACGAGTCTTCAAAGCAGATGTATTATGGTAATGTTAAGACCTCGGAAACGTCGTGGACAAAGCCGAGCAAGTGA 2796 44.42 MGRRRERRLAALSNAGRRVKLDLFAEPSGDLDGSDVQEEVGGDIDSRETTKLPKSASSSGHQAQNPLLLLEQYSDDEVDEDLDTNSDHDGQDALLPDRTDEVSAEGCEKMDAKVSENLITQKAVQEESERDSVEFSENLESKDEGKTDTNNLGYLSKETDLVQTSVSASSDVQVGGDVISGWRIVMHEESHNYYYWNVETGETSWEVPDVVLAQAQPTQSTTDIKTSPTQFPENVTVFKQESCLANGGKLDLFSAESTGYKNGAPVCASQGSEVDQSYALFSTCSNDVNIAKAGSEIYVDYTMTHEESKSGLDLPSHLLNWSASLLERLKSLQKSGGHEWTSEYIQETQIRLEDLKSLMPYKTSLLPFWEHSAGKLKQIEDDINKEIYQTAAVSSQLGEAKATDSPNIVRSNVGSEVERVACGGSASEHSHLRTDSALTIQGDQSQLTVIANGENISSSNAIEHFGNTTAVIEQVSEVVIDEMASKSGVHSVEDVDMEVDMEVEDASSAGNLMVTGTSDMSVAKSFTSSEQPLLPDPQAQPNLSCGYESIVPEDSSMVPPPPDEEWIPPPPPDNEDIPPPPPDEPAEPFYPMPPSYTQLGQPPCYTEPYQVSYPDSSIKYYTHPVPEAILSANFYGHPEACNVVLAQAPFYYEAVPNSHTDSSPVVVNGVVPESYGILQDTTTSLPVFSTAEPSQLHVDASSVRFEPSSSIQYRSSDIENMNTASSTDEIDKGRKETASVSFRSTSGSPTNDVLPTSKAVTDSSAVANASTVSKVQPKAPRSKKQTVTVAPSLRSNKKVSSLLDKWKAAKEELEDEEEPENAYEILERKRDREIKEWHAQQVSSGDAKENANFQPLGGDWRERVKRRRAQSSSKVTQSPAEASADGNQQPDLAQISKDLPSGWQAYWDESSKQMYYGNVKTSETSWTKPSK 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7844159 7851138 + CmaCh01G010600.1 Cma01g01060 286753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01060 931 MobiDBLite consensus disorder prediction 51 69 - -
Cma01g01060 931 MobiDBLite consensus disorder prediction 523 589 - -
Cma01g01060 931 Coils Coil 796 816 - -
Cma01g01060 931 MobiDBLite consensus disorder prediction 122 152 - -
Cma01g01060 931 MobiDBLite consensus disorder prediction 523 545 - -
Cma01g01060 931 ProSitePatterns WW/rsp5/WWP domain signature. 903 929 IPR001202 GO:0005515
Cma01g01060 931 ProSiteProfiles WW/rsp5/WWP domain profile. 176 210 IPR001202 GO:0005515
Cma01g01060 931 Gene3D - 893 931 - -
Cma01g01060 931 MobiDBLite consensus disorder prediction 24 105 - -
Cma01g01060 931 MobiDBLite consensus disorder prediction 555 589 - -
Cma01g01060 931 MobiDBLite consensus disorder prediction 837 897 - -
Cma01g01060 931 CDD WW 900 929 IPR001202 GO:0005515
Cma01g01060 931 ProSitePatterns WW/rsp5/WWP domain signature. 182 208 IPR001202 GO:0005515
Cma01g01060 931 SUPERFAMILY WW domain 172 208 IPR036020 GO:0005515
Cma01g01060 931 SMART ww_5 898 931 IPR001202 GO:0005515
Cma01g01060 931 SMART ww_5 177 210 IPR001202 GO:0005515
Cma01g01060 931 MobiDBLite consensus disorder prediction 87 105 - -
Cma01g01060 931 PANTHER OS06G0298400 PROTEIN 1 931 - -
Cma01g01060 931 SUPERFAMILY WW domain 894 929 IPR036020 GO:0005515
Cma01g01060 931 MobiDBLite consensus disorder prediction 739 792 - -
Cma01g01060 931 ProSiteProfiles WW/rsp5/WWP domain profile. 897 931 IPR001202 GO:0005515
Cma01g01060 931 MobiDBLite consensus disorder prediction 715 792 - -
Cma01g01060 931 MobiDBLite consensus disorder prediction 871 895 - -
Cma01g01060 931 MobiDBLite consensus disorder prediction 123 147 - -
Cma01g01060 931 Gene3D - 178 218 - -
Cma01g01060 931 CDD WW 180 209 IPR001202 GO:0005515
Cma01g01060 931 Pfam WW domain 899 929 IPR001202 GO:0005515
Cma01g01060 931 Pfam WW domain 180 208 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01060 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1352.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01060 Cma09g01029 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01060 Cma-Chr1:7844159 Cma09g01029 Cma-Chr9:5277219 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01060 Cma_Chr01 FPKM 4.417013 4.382234 5.11845 5.429625 6.253579 6.071163 6.616757 6.494458 6.963624 6.622921