Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01063 ATGATTCATTCTGGTTTCTTCCTTGCGGGTCCTTCATTTAATTCTGATGCTACTACATCTTTCATATCGAGTACTGTGTCTGGAGAAGATGGCGCTACGGCTGATGATACCAGAAATGATACCTCTGGTTCCCTCCCTCCTCCTTTTTGGGTTGGAACAGCCATGAGAGTCTCTAGAGCTAGATGGTTCATTTTCTTGAGGAGAGTTTTTCATTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCAGGTTCATGGATGGCGATGGAACTTGTAGCTTTGTTATGTCATCTAATCATCTCAGTATTTACTCTTGCCATTTCACAAACTGAGAAGCCTGTTTGGCCTATGAGATTGTGGATAGCTGGTTATGATCTTGGCTGTGTTCTTAGCTTACTGCTTCTCTACGGTCGCCATCGGTGTCGTTATCTTATGCAGGGAGATAGTAACAGTCTTTCGGATATCGAGCACCAGAGCAGCAATGAATCATCGAGGTACTCACATTTGATCAACAGATGTCGGACGTTTCTTGATCTTTTCTTTGCAATATGGTTCGTAATGGGCAATCTTTGGATCTTCGATTCTCGGTTTGCCTCGTTTCAAAGAGCTCCCAAGCTACATCTATTATGCAGCTTCGTGCTAGTTTGGAATGCCATATGCTACTCTTTCCCATTCTTCCTGTTTCTGCTGCTATGTTGCTGTGTGCCAGTGATTAGTAGTTTTATAGGATATAACATCAACATGGGATCAACCGAAAAAGGCGCATTGGACGATCAAATCTCTCAACTACCTTGCTGGAAATACAAAGTCGTCGACGTCAACATCAACCTCGGAATTCAACCCGATAATTCCAATACAGGACTCCCAAAAGAGGATCCAGAATGCTGCATCTGTCTTGCCAAGTATATAGATAAGGAAGACGTGAGACAGTTGCCTTGTTCTCATGTGTTCCATCTCAGGTGTGTAGATAAATGGCTTGCTATAGCATCATCATGCCCTCTCTGTAAGCAACAACTTCAAAGATAG 1038 43.06 MIHSGFFLAGPSFNSDATTSFISSTVSGEDGATADDTRNDTSGSLPPPFWVGTAMRVSRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMELVALLCHLIISVFTLAISQTEKPVWPMRLWIAGYDLGCVLSLLLLYGRHRCRYLMQGDSNSLSDIEHQSSNESSRYSHLINRCRTFLDLFFAIWFVMGNLWIFDSRFASFQRAPKLHLLCSFVLVWNAICYSFPFFLFLLLCCCVPVISSFIGYNINMGSTEKGALDDQISQLPCWKYKVVDVNINLGIQPDNSNTGLPKEDPECCICLAKYIDKEDVRQLPCSHVFHLRCVDKWLAIASSCPLCKQQLQR 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7869119 7872561 - CmaCh01G010630.1 Cma01g01063 286756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01063 345 Pfam Ring finger domain 298 340 IPR001841 -
Cma01g01063 345 CDD RING-H2_RNF111_like 297 340 - -
Cma01g01063 345 SMART ring_2 299 339 IPR001841 -
Cma01g01063 345 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 25 344 - -
Cma01g01063 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 344 IPR013083 -
Cma01g01063 345 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 25 344 - -
Cma01g01063 345 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Cma01g01063 345 SUPERFAMILY RING/U-box 294 343 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01063 Cma09g01026 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01063 Cma-Chr1:7869119 Cma09g01026 Cma-Chr9:5270586 3.19E-179 dispersed
Cma01g01063 Cma-Chr1:7869119 Cma09g01025 Cma-Chr9:5266679 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01063 - - csv:101217150 596.66