Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01067 ATGCCTGCCGCCAAGTTCAACAAGAAGAAAGCTGTGAAACGAGACGACCCACAATCGAAAAGGAAGAAGAAGGACGAGCTCTTCACACCTAAACGTGGAAAGAAAGAGGAGGAGAATGATTCTGACCTCTCTGATGCTCTGGGTGAGGAAGAAGTAGAGGATGGAATGCTTGATGGTGATGAACTAGGATCTGGGTCCGGTTCTGGTTCTGGTTCTGAAGTTTCTTCTGATGGTGATGATCCCTTGGCTGACGATTTCTTCCATGGAAGTGACGAAGAGAATGTTTCTCGTTCTGTTTCTGGTTCGGATTCTGATGAATCTGACATCGAAGAGAAGTCGAGAGCTATTGATGAAGAAAGAGCGAGGGAAGAAAAAGATGCTGCAGATGAAATGCAGCTCAATATTAAAGAAGAATCCGATGAGTTCAGATTACCAACCAAGGAGGAACTTGAAGAAGAGGCGCTTAGACCTCCTGACATTTCAAATTTACAAAGGCGGATAAGAGAAATTGTTCGAGTGCTTACAAATTTCAAGGCCTTGAGGCAAGAGGGGGCGACCCGGAAGGATTATGTTGAACAACTTAAGAAAGATATTGGTTCATACTACGGTTATAACGAATTTCTTACTGGGGTTCTAGTTGAGTTGTTTCCCGTTGTCGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCAAGACCAATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGTGATCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGTGCAACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTTCCTGTTATGGCCCTTGCTCCTCAAGAAAAAGAACGAATTGTTGACATGGCGGCAGCACCTGGTGGTAAGACTACTTACATAGCAGCACTCATGAAAAATAGTGGAATAATATTTGCTAATGAGATGAAAGTACCAAGATTGAAGTCACTTACTGCAAATTTACATCGAATGGGAGTGACAAATACTGTTGTCTGTAACTACGATGGGAAGGAGCTCCCGAAAGTGTTGGGGATGAATACGGCCGATAGAGTTCTATTAGATGCCCCTTGTAGTGGATCTGGAGTTATATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCCTTGAAGAAATCCAGAAATGTGCTCAGTTGCAGAAGCAACTTATACTTGCTGCAATTGACATGGTTGATGCAAATTCAAAATCTGGGGGTTATATCGTTTACTCCACGTGTTCCATAATGGTCGACGAGAATGAAGCAGTTGTTGACTATGCACTAAGGAAGAGGAACGTGAAACTTGTTCCATGTGGCCTTGATTTCGGACGTCCCGGGTTTATCCGGTTTAGGGAAAAACGTTTTCACCCATCTTTAGAGAAGACGAGACGTTTCTACCCCCATGTCCATAACATGGATGGCTTTTTTGTAGCAAAGTTGAAGAAAATGAGCAACAAGATACCAACCACTCAATCTTCAGAAGCATTGGAAGAAGAGGCCGTGGAAGAGGAGGATATTGAGGCAGAGAAGAGTGCAAATGAGAAGACCGATGGCGAATGCCTTCACCCGCAAGTGAACGATGGTAAAAAGCGGAAGAAGGTCGTTTCGGAAAAACACGAAGTTGAAAATGGCGAAGAATCGAAGCCGGGTGTGGAAAAGAGGAAGAAGAGAAAATTTCCCTCGAGAGAGGAAATCTCAAAAGCTAGGGAAGAAAAGCGACAAGCTTTGAGGGAAAAGAAAGCTGGTGGGAGCAAGAAATAA 1851 43.17 MPAAKFNKKKAVKRDDPQSKRKKKDELFTPKRGKKEEENDSDLSDALGEEEVEDGMLDGDELGSGSGSGSGSEVSSDGDDPLADDFFHGSDEENVSRSVSGSDSDESDIEEKSRAIDEERAREEKDAADEMQLNIKEESDEFRLPTKEELEEEALRPPDISNLQRRIREIVRVLTNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLTGVLVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGMNTADRVLLDAPCSGSGVISKDESVKTSKSLEEIQKCAQLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVDENEAVVDYALRKRNVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPTTQSSEALEEEAVEEEDIEAEKSANEKTDGECLHPQVNDGKKRKKVVSEKHEVENGEESKPGVEKRKKRKFPSREEISKAREEKRQALREKKAGGSKK 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7891075 7896146 + CmaCh01G010670.1 Cma01g01067 286760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01067 616 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 50 599 IPR023267 GO:0001510
Cma01g01067 616 MobiDBLite consensus disorder prediction 8 41 - -
Cma01g01067 616 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 220 297 IPR031341 -
Cma01g01067 616 Gene3D Vaccinia Virus protein VP39 300 606 IPR029063 -
Cma01g01067 616 MobiDBLite consensus disorder prediction 538 616 - -
Cma01g01067 616 MobiDBLite consensus disorder prediction 1 129 - -
Cma01g01067 616 PANTHER BNACNNG49010D PROTEIN 50 599 - -
Cma01g01067 616 MobiDBLite consensus disorder prediction 103 129 - -
Cma01g01067 616 PRINTS RNA (C5-cytosine) methyltransferase signature 284 298 IPR023267 GO:0001510
Cma01g01067 616 PRINTS RNA (C5-cytosine) methyltransferase signature 313 323 IPR023267 GO:0001510
Cma01g01067 616 PRINTS RNA (C5-cytosine) methyltransferase signature 381 393 IPR023267 GO:0001510
Cma01g01067 616 PRINTS RNA (C5-cytosine) methyltransferase signature 435 451 IPR023267 GO:0001510
Cma01g01067 616 PRINTS RNA (C5-cytosine) methyltransferase signature 495 512 IPR023267 GO:0001510
Cma01g01067 616 Gene3D Sun protein; domain 3 190 297 - -
Cma01g01067 616 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 224 513 IPR001678 GO:0008168
Cma01g01067 616 MobiDBLite consensus disorder prediction 518 616 - -
Cma01g01067 616 Pfam 16S rRNA methyltransferase RsmB/F 301 511 IPR001678 GO:0008168
Cma01g01067 616 MobiDBLite consensus disorder prediction 42 58 - -
Cma01g01067 616 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 198 512 IPR029063 -
Cma01g01067 616 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 236 512 IPR011023 GO:0003723|GO:0006396|GO:0008757
Cma01g01067 616 Coils Coil 121 141 - -
Cma01g01067 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 187 207 IPR023273 GO:0008168
Cma01g01067 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 220 232 IPR023273 GO:0008168
Cma01g01067 616 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 243 256 IPR023273 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01067 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 986.097
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01067 Cma09g01020 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01067 Cma-Chr1:7891075 Cma07g00556 Cma-Chr7:2384159 1.38E-16 dispersed
Cma01g01316 Cma-Chr1:9394692 Cma01g01067 Cma-Chr1:7891075 2.42E-08 transposed
Cma01g01067 Cma-Chr1:7891075 Cma09g01020 Cma-Chr9:5230930 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01067 Cma_Chr01 FPKM 15.311468 15.553554 20.864672 23.360556 28.332064 23.228571 28.61359 50.216637 50.486584 48.53516