Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01075 ATGCAGCAGCTCCGTTGCGGCACAGCCGCCGGGACAATGCTCCTTGCCGTGCTTCTCCTCGTGAGTTCTGCCGCTAGGGCTCACAACATCACGAAGTTGCTTGCGAAGCACCCGGAGTTCTCCACCTTCAACGACTACTTGACTACTACTCACCTCGCGCCGGAGATCAACCGGAGAACCACTATTACCGTCTGCGCTGTCGATAATTCCGTCATGTCCGATCTCTTGGCGAAGAAGCTTTCTATTTACTCCATCAAGCACACGCTCTCGCTCCATGTCCTCCTAGACTACTACGGAGCCAAGAAGCTTCACCAGATCACCAATGGCACTGCTCTCGTAGCGACTATGTTTCAGACCACCGGCGCTGCTCCCGGTGCTTCCGGTTTCGTCAACATCACAAATTTTAAGGGCGGGAAGGTAGGATTTGCTCTTCAAGATAGTGACGCCATTGATGCGATGTTTGTGAAATCTGTGGAGGAGGCTCCGTACAATATCTCTGTGATTCATATCAGTAAGATCTTGCCGTCGGAAGTGGCGGAGGCTCCAACTCCGTCTCCAAGTGAGATGAATTTGACCGGATTAATGTCCGCTCACGGTTGCAAGGTCTTCGCCGATGCGTTTCAGGCCTCCGACGCTGCGAAGGTTTTTCAGGAAAACGCAATCGGTGGATTGACGATTTTCTGTCCTGTTGATGACGCTTTCAAGGCGTTTTTGCCGAAGTATAAGAACTTGACGGCCGCTGGAAAGACATCGTTGCTCGAATACCACGGATTGCCTGTTTACATGTCTATGTCTATGCTTAAGTCCAACAATGGCGTAATGAACACCTTGGCTACAGACGGCGCCAACAAGTACGATTTCGTCGTGCAAAACGATGGCGAAGTGGTCACTATCCAAACGAAGGTTGTAACCGCCAAGGTCACCAGCACGCTTCACGACGAGCAACCAGTGGCGATCTACACGATCAACAAAGTTCTGAAGCCAAGAGAGCTCTTCAAGGCTTCTCCGTCTCTGTCACCGTCACCGGCTCCAGCGCCCGAGGAGGAGAAACCTGCCGACGCGCCAAAGCCTCATTCTCGTCGGCACAAGGGCACAACGACTCCTGCAGCAGACTCACCGGAAGATTCCCCGTCGGACGAAGATTCGGCAGATAAGACAGCGGACGACACTGGTAGCGCGGCGAGGCTGGATGGATGGAGATTTGTTTTGGCCGGAATTTCTGGATTGGCAGCGCTTCTTCTCCTGTAA 1248 52.88 MQQLRCGTAAGTMLLAVLLLVSSAARAHNITKLLAKHPEFSTFNDYLTTTHLAPEINRRTTITVCAVDNSVMSDLLAKKLSIYSIKHTLSLHVLLDYYGAKKLHQITNGTALVATMFQTTGAAPGASGFVNITNFKGGKVGFALQDSDAIDAMFVKSVEEAPYNISVIHISKILPSEVAEAPTPSPSEMNLTGLMSAHGCKVFADAFQASDAAKVFQENAIGGLTIFCPVDDAFKAFLPKYKNLTAAGKTSLLEYHGLPVYMSMSMLKSNNGVMNTLATDGANKYDFVVQNDGEVVTIQTKVVTAKVTSTLHDEQPVAIYTINKVLKPRELFKASPSLSPSPAPAPEEEKPADAPKPHSRRHKGTTTPAADSPEDSPSDEDSADKTADDTGSAARLDGWRFVLAGISGLAALLLL 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7935571 7936818 - CmaCh01G010750.1 Cma01g01075 286768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01075 415 MobiDBLite consensus disorder prediction 334 391 - -
Cma01g01075 415 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11 400 IPR033254 -
Cma01g01075 415 SMART fasc_3 225 329 IPR000782 -
Cma01g01075 415 Gene3D FAS1 domain 191 329 IPR036378 -
Cma01g01075 415 ProSiteProfiles FAS1/BIgH3 domain profile. 27 174 IPR000782 -
Cma01g01075 415 SUPERFAMILY FAS1 domain 184 329 IPR036378 -
Cma01g01075 415 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 11 400 - -
Cma01g01075 415 MobiDBLite consensus disorder prediction 349 368 - -
Cma01g01075 415 SUPERFAMILY FAS1 domain 34 174 IPR036378 -
Cma01g01075 415 Pfam Fasciclin domain 199 328 IPR000782 -
Cma01g01075 415 Gene3D FAS1 domain 26 175 IPR036378 -
Cma01g01075 415 ProSiteProfiles FAS1/BIgH3 domain profile. 187 326 IPR000782 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01075 - - - csv:101212499 619.387
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01075 Cma09g01013 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01075 Cma-Chr1:7935571 Cma19g00848 Cma-Chr19:7999324 5.43E-145 dispersed
Cma06g00675 Cma-Chr6:3379043 Cma01g01075 Cma-Chr1:7935571 6.72E-64 transposed
Cma01g01075 Cma-Chr1:7935571 Cma09g01013 Cma-Chr9:5165830 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g668 . Blo03g01484 Bda07g00412 Bda09g00439 Bpe09g00126 Bpe08g01090 . Bma13g01116 . Cmo06g00685 Cma01g01075 Cma09g01013 Car01g00951 . Sed07g2749 Cpe06g00821 Cpe02g00823 Bhi09g01777 Tan01g3193 Cmetu01g1443 . . Mch11g1277 . Cla10g00408 Cam10g0405 Cec10g0427 Cco10g0417 Clacu10g0412 Cmu10g1244 Cre10g0661 Cone6ag0009 . Cone14ag1220 Cone15ag1241 Lsi02g01825 . . Cme06g02759 . . . Bda12g00965 Bpe11g00589 . Bma07g01245 Bma14g00680 . Cmo01g01120 Cmo09g01015 . . . . . . . . . . . . . Cla09g02079 Cam09g2166 Cec09g2231 . . . . Lsi05g00498 . Chy01g01144 Cme01g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004217 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01075 Cma_Chr01 FPKM 10.440705 14.168485 6.178954 5.47121 26.713324 27.206602 20.64942 0.437786 0.563282 0.2299