Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01079 ATGGCCAGCAAAGAAGTGATAGAGCCGCTGTTACCAACGTCGTCTAATACTATTGGAACAAGAATATTAGATATTCCCAGAAGCAAAGGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCGGATTCACCTCATTCAGAGACCACCGGCACCGGCACCGGCGCAGACACTTGTCCAGTTCCACGTTCAGGATTTATTTTTGGAAATCTTGGTCCGAGTTTAAGAAGAGTAGCCTTAGTTTTAATACTATACATGGGTATAGGAACTCTATGTTTTTATCTTGTCAGGTACCAAATCAGAGGGGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACCGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGCGCTTTTGTCTTCTCAGGAATGGCCCTCGTTGGCCTAATACTAAGCAGTGCAGCCGATTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAGACGTTGAATGCGCACCAAAACGGCCATTGTGACATGACAAAAGAAATTGATACTGATAAAGCCAGAAACAAGTGTATAGTGGTGTTTCTCTTGCTTATTTTGTTCATCATTTCTGGGACTGTCTTTCTTGTTACCATTGAGAAGTTGGGTTTCATTGATGCCTTTTATTGTGTATGTTCTACCATCACTACATTAGGCTATGGAGACAAAAGCTTCTCGACTAAGTCGGGGCGCATCTTCGCCATTTTCTGGATCTTGATAAGTACCATCACACTGGCTCAGTTCTTCCTCTACATTGCTGAGCTAAACACTGAAAGAAGGCAGAAGTCTCTGGTGAAGTGGGTTCTGAGTAAAAAGGTGACAAACTTGGATCTTGAGGCTGCGGATCTCGATAACGACAGGGTCGTCGGGGCTGCAGAATTTGTGATACACAAGCTGAAAGAGATGGGGAAAATCACAGAAGATGACATTGCACCTGTGCTGAAGGAATTTGAGAAGCTTGATGTTGATCAGTCAGGAACGCTGTCCACATCTGATTTAACACTTGCTCAATCGTCTTAA 1068 42.98 MASKEVIEPLLPTSSNTIGTRILDIPRSKGRLRRTKSAPHADSPHSETTGTGTGADTCPVPRSGFIFGNLGPSLRRVALVLILYMGIGTLCFYLVRYQIRGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFSGMALVGLILSSAADYLVEKQEILLFKTLNAHQNGHCDMTKEIDTDKARNKCIVVFLLLILFIISGTVFLVTIEKLGFIDAFYCVCSTITTLGYGDKSFSTKSGRIFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLSKKVTNLDLEAADLDNDRVVGAAEFVIHKLKEMGKITEDDIAPVLKEFEKLDVDQSGTLSTSDLTLAQSS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7960855 7964255 - CmaCh01G010790.1 Cma01g01079 286772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01079 355 Gene3D - 177 283 - -
Cma01g01079 355 Gene3D - 73 169 - -
Cma01g01079 355 SUPERFAMILY Voltage-gated potassium channels 189 290 - -
Cma01g01079 355 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Cma01g01079 355 Pfam Ion channel 80 160 IPR013099 -
Cma01g01079 355 Pfam Ion channel 200 271 IPR013099 -
Cma01g01079 355 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 23 350 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma01g01079 355 SUPERFAMILY Voltage-gated potassium channels 74 170 - -
Cma01g01079 355 MobiDBLite consensus disorder prediction 42 56 - -
Cma01g01079 355 PRINTS Two pore domain K+ channel signature 116 144 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma01g01079 355 PRINTS Two pore domain K+ channel signature 232 241 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma01g01079 355 MobiDBLite consensus disorder prediction 29 56 - -
Cma01g01079 355 PANTHER TWO PORE POTASSIUM CHANNEL A 23 350 - -
Cma01g01079 355 SUPERFAMILY EF-hand 283 350 IPR011992 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01079 Cma09g01005 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01079 Cma-Chr1:7960855 Cma03g01377 Cma-Chr3:8737808 3.67E-68 dispersed
Cma18g00614 Cma-Chr18:5434263 Cma01g01079 Cma-Chr1:7960855 4.69E-120 transposed
Cma01g01079 Cma-Chr1:7960855 Cma09g01005 Cma-Chr9:5128133 5.09E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01079 K05389 - csv:101216032 558.14