Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01081 ATGTCCCCGTCGATATTCCGATCCCGATTTATTTCCTTGCTAAAGAATCGCCATGGACGTCTTATGAGCTCCGACCTCGCTTCGATCCCTTCCAAGGATTCCATCATTGCGTCCCAGAAGCTCGTCTCCGATCAGATTCCGCAATCCATTTCTTCTTCTTCTTCTTCCTCTAAGCCCTTGAATTTCCTTAAGTACAGTTTGATTAGTGCTCTGACGGCGGCTACTGCAGTTGCTGGTTACGCCAGCTATGCTTATAGTTACGATGAAATTGCGGAGAAGGCAAAAGCTCTCCGTCGGTCTGCAAGTTATACTGCCATGGACGATGTTTCTGGTGTTGATAAAGTTCAGGGCAGGCTATACTCCACGATAATGACAGTTCCTGTAAAACTAGCTGATGTTTACCTGGATTTGAGGAAGACAATTGAAGAACAAGTTAAAGGTTATACTGAACCCAATGCGGAAATGCTTCTTCCGGATTTGCATCCCTTGGAACAACATGTATTTACGCTTGTTCTAGATCTAAATGAGACTCTAGTGCACTCTGATTGGACGCGAGAAAGAGGCTGGCAGACATTTAAAAGACCTGGAGTTGATTCTTTCTTGGAACATCTTGCACAATTTTATGAAATTGTTATATTCTCTGATCAATCAAATATGTATGTTGATCCTGTCATTGATAGGTTGGACCCCAAGCATTGCATACGATATAGGTTGTCAAGAGCAGCTACAAAGTACGAGAATGGAAAACATTACAGAGACCTGTCAAAGCTTAACAGGGATCCCAGGAAGATTATTTATTTGAGTGGCCATGCATTTGACAGTAGTCTACAACCAGAAAACTCTGTTCCAATAAAGCCATGGAAGTGTGAGGCAGATGATACTGCTCTTCTTGATTTTATACCATTTCTTGAATTTGTTGCACGAAATAGTCCAGCTGACATCAGACAAGTTCTAGAATCATATAATGGATGTGATATTCCCACAGAATTTATAAGACGTTCTAAAGAGCATCAAAGGCGGATACAAGAACAGAAGCAGCAAGGGCGACTATGGAAACGTTGA 1062 42.0 MSPSIFRSRFISLLKNRHGRLMSSDLASIPSKDSIIASQKLVSDQIPQSISSSSSSSKPLNFLKYSLISALTAATAVAGYASYAYSYDEIAEKAKALRRSASYTAMDDVSGVDKVQGRLYSTIMTVPVKLADVYLDLRKTIEEQVKGYTEPNAEMLLPDLHPLEQHVFTLVLDLNETLVHSDWTRERGWQTFKRPGVDSFLEHLAQFYEIVIFSDQSNMYVDPVIDRLDPKHCIRYRLSRAATKYENGKHYRDLSKLNRDPRKIIYLSGHAFDSSLQPENSVPIKPWKCEADDTALLDFIPFLEFVARNSPADIRQVLESYNGCDIPTEFIRRSKEHQRRIQEQKQQGRLWKR 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7968801 7973053 + CmaCh01G010810.1 Cma01g01081 286774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01081 353 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 5 308 - -
Cma01g01081 353 Gene3D - 153 336 IPR023214 -
Cma01g01081 353 SMART forpap2 166 294 IPR004274 -
Cma01g01081 353 ProSiteProfiles FCP1 homology domain profile. 163 306 IPR004274 -
Cma01g01081 353 SUPERFAMILY HAD-like 155 318 IPR036412 -
Cma01g01081 353 CDD HAD_FCP1-like 168 284 - -
Cma01g01081 353 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM50-LIKE 5 308 - -
Cma01g01081 353 Pfam NLI interacting factor-like phosphatase 169 315 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01081 K17496 TIM50; mitochondrial import inner membrane translocase subunit TIM50 - csv:101207617 617.846
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01081 Cma09g01002 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01081 Cma-Chr1:7968801 Cma07g00140 Cma-Chr7:715137 1.30E-20 dispersed
Cma01g01081 Cma-Chr1:7968801 Cma09g01002 Cma-Chr9:5107184 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g648 . . . . . . . . . . Cma01g01081 Cma09g01002 Car01g00956 Car09g00913 Sed07g2743 Cpe06g00810 Cpe02g00817 Bhi09g01749 Tan01g3181 Cmetu01g1982 . . Mch11g1259 . . . . . . . . . . Cone14ag1212 Cone15ag1233 Lsi02g01842 Csa07g00939 . . . . . . Bpe11g00582 . . Bma14g00172 . Cmo01g01127 Cmo09g01002 . . . . . . . . . . . . . Cla09g02063 Cam09g2152 Cec09g2217 . . . . . . Chy01g01165 Cme01g00930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005181 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 4 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01081 Cma_Chr01 FPKM 16.139692 19.94153 21.246656 18.502199 14.051542 12.182664 14.469198 22.009508 20.509556 23.40877