Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01083 ATGGCTTGGAATTGCGTCCCCAACCAGGCTGCTGTTCATTACGATTTCTTGCCGTACGAGCGAATCCAAAAACTCCCGCCAACTCTCGATCCAGATTTCCAATGCGACATCGAGTTCCAAATATTATATCTCTTCTTCATGATTCAAACATTCTTTGGAATTAGCGGATTTAGTTTACTGTTGTCTGTAATTACGCTTCGCGTGTTTAATCGCTTGTTTAAGTTCTTCCACTTCGCCCTAGCCGCTTCGGGGTTCCGAAGATTTTTCTTCCGTAACATGGATGTGGGCGACCTTAACAAAGTTTGGGAAATTAAAGCCCTGAAGAAGGCTGGGGAGAAAGAAGCTAAGGAGATTCTGGAGAGAATTGCCAAACAAGTTCAACCCATTATGCGGAAACGCAAATGGCGAGTCAAGGTCCTTTCGGAATTCTGCCCAAAAAATCCTGCACTTTTAGGATTAAATGTGGGACGTGGAATTCATGTGAAGTTGAGGCTTCGAAGGCCAAATAGGGATGGAGATTTCTTCCCCTTCAATCAAGTTTTGGATACAATGTTACATGAGCTTTGTCACAATCTCATCAGTCCTCACAATGCCAATTTCTACAAGCTTTGGGATGAACTTCGAAAGGAATGTGAGGAGTTGATGGCTAAGGGAATTAGTGGCTCAGCACAGGGCTTTGAACTCCCGGGGAGGCGTTTGGGTGGTAAATCTCAACAACCCCCTCTCTCTTCCCTCCGCAAATCTGCCTTAGCCGCTGCAGAAGGAAGAAAACGTTTGGGATCTCTACTTCCTTCTGGTCCTAATCGGCTTGGTGGTGATAGCAACATCATGGATGCTCTAAGTCCTGTACAAGCAGCTGCAATGGCTGCAGAAAGGAGGCTTCAGGATGATATTTGGTGTGCTTCATCTCAAGAAATGCCTGTAGATGAGGAATGTTGCTCTGATTTTCCATCAGAAACGGCACATTCCTCTCACGCAGGTAAATCAGGGCCCTCTAGCAATTTAAGTATTCGTGTGGATGCATTACACCAGAAAAGAAATCGTGAATCAGAAAAGAGTTCCAATATGTCTTCCCGTGGTCATTTGAGACCTGATTTTGTTGATTTATCTGAAGACGTTTTAATCCCTGGGTCCTCTGCCGTCTATGATGAGGAACCAAAAAAGCGATACAAAATATCAGATAGAGTTATATTTCCCCAACCTTGTGCAGAAACTAGCGCAATAGATTTCCCCTGTTTATCCTCTAATTCGATGCCAATTCACGATGGAACTCTTCATCCTGAAGAACATTCCATGTGGGAGTGCGGGAATTGCACCTTACTGAATCCACCACTAGCTCCAATATGTGAGCTTTGTTTGTCACAAAAATCAAAAGATGCTGATACCAAGTACAGATTCTGGTCGTGTAAATTCTGCACTTTAGAAAACAGTGTGAAGTTGGAAAAATGCTCAGCTTGTGGTCAATGGAGCCAGTGTCGACTCGAGGACCGAATCTCGGCACTTGAGGGGCTGCTGATATATCCTGACAACAAGTATCTTGATTGCCTCAAATCAACCAAGAAGCGTCACCTCATTGAAGTGAAACACATTTGA 1593 44.13 MAWNCVPNQAAVHYDFLPYERIQKLPPTLDPDFQCDIEFQILYLFFMIQTFFGISGFSLLLSVITLRVFNRLFKFFHFALAASGFRRFFFRNMDVGDLNKVWEIKALKKAGEKEAKEILERIAKQVQPIMRKRKWRVKVLSEFCPKNPALLGLNVGRGIHVKLRLRRPNRDGDFFPFNQVLDTMLHELCHNLISPHNANFYKLWDELRKECEELMAKGISGSAQGFELPGRRLGGKSQQPPLSSLRKSALAAAEGRKRLGSLLPSGPNRLGGDSNIMDALSPVQAAAMAAERRLQDDIWCASSQEMPVDEECCSDFPSETAHSSHAGKSGPSSNLSIRVDALHQKRNRESEKSSNMSSRGHLRPDFVDLSEDVLIPGSSAVYDEEPKKRYKISDRVIFPQPCAETSAIDFPCLSSNSMPIHDGTLHPEEHSMWECGNCTLLNPPLAPICELCLSQKSKDADTKYRFWSCKFCTLENSVKLEKCSACGQWSQCRLEDRISALEGLLIYPDNKYLDCLKSTKKRHLIEVKHI 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7979453 7986187 + CmaCh01G010830.1 Cma01g01083 286776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01083 530 ProSitePatterns Zinc finger RanBP2-type signature. 467 486 IPR001876 -
Cma01g01083 530 PANTHER ZINC ION BINDING PROTEIN 93 490 - -
Cma01g01083 530 ProSitePatterns Zinc finger RanBP2-type signature. 433 452 IPR001876 -
Cma01g01083 530 MobiDBLite consensus disorder prediction 317 335 - -
Cma01g01083 530 Pfam WLM domain 100 295 IPR013536 -
Cma01g01083 530 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 93 490 - -
Cma01g01083 530 ProSiteProfiles WLM domain profile. 92 295 IPR013536 -
Cma01g01083 530 MobiDBLite consensus disorder prediction 310 335 - -
Cma01g01083 530 MobiDBLite consensus disorder prediction 344 363 - -
Cma01g01083 530 SMART zf_4 465 489 IPR001876 -
Cma01g01083 530 SMART zf_4 431 455 IPR001876 -
Cma01g01083 530 Gene3D - 427 466 - -
Cma01g01083 530 SUPERFAMILY Ran binding protein zinc finger-like 429 455 IPR036443 -
Cma01g01083 530 MobiDBLite consensus disorder prediction 227 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01083 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] - csv:101209563 661.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01083 Cma09g00998 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01083 Cma-Chr1:7979453 Cma20g00243 Cma-Chr20:1180911 3.18E-11 dispersed
Cma03g00091 Cma-Chr3:901536 Cma01g01083 Cma-Chr1:7979453 4.00E-13 transposed
Cma01g01083 Cma-Chr1:7979453 Cma09g00998 Cma-Chr9:5090093 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g639 . . Bda07g00400 . . . . . . . Cma01g01083 Cma09g00998 Car01g00959 Car09g00910 . Cpe06g00807 Cpe02g00815 Bhi09g01746 . . . . Mch11g1254 . . . . . . . . Cone6ag0016 Cone9ag0015 . . Lsi02g01845 Csa07g00943 . . . . . . Bpe11g00580 . . Bma14g00174 . Cmo01g01129 Cmo09g00999 . . . . . . . . . . . . . Cla09g02060 Cam09g2149 Cec09g2214 . . . . . . Chy01g01168 Cme01g00936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006397 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01083 Cma_Chr01 FPKM 0.782172 0.622204 0.389657 0.314579 2.765931 2.819955 2.224152 0.260618 0.200989 0.239681