Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01084 ATGCTGTTCTTGGCCAAAAGGATGGGACATGGTAACTATTTTGTGGAGTGGAAGGAGCAATTTGTTTCGCAAGAACGGGGAAACCGCGTGGTTCATTATTTTTTGAAGGATTCTTCTGGAGAGTCTATTCTTGCAGTTGTGGGGACTGAGAGAAGTGTCAGACACATGTTTTATGTTGTTGCAGACGAGTTTTTGCAAGCTCATGGGAAGGAAAACTCTGTCCATTCTGGTTTCAAATGGAGGTCGAGGCGAGAGGTCGTGGATTGGCTTACTTCTATGTTATCAAAGCAGCATTCTCCTGGAGATCATTCTGTGCCTTGTAAATGTGATGCAATACAAACACTGGGAACTCTTCAATTTTCACATAGTGGACTAGTTCTCCAACAATCTGATGTACCAGATGATAAAGTTCGGTCATCAAGGAATTCCAAGGGACCTGCATCAGATATTGTATGGTCTGGTGCTGCATGGACCTGCGGTAAACGGCTCAAGCATTACCCGTCATTTTGCAGGAATGGGACTTCAATCGTGCTAGAAATTTTCACTTCATCCAAGTTTAAATCTATGATGTTTCATCTTGAAACTAATGTACATTCTTTTGTTTATGTCATGGCTAAGGGAGAAAACCACTATCTTGCTTACCTGGAGGACATGTACGAAGATAAGAGGGGTCAGAAAAAGGTGAAGGTGAGGTGGTTTCATCATAGTCAGGAGGTGAAAGGTGTGATTGCGTTACGAAATTCTCACCCAAGAGAAGTTTTTATCACACCATATGTGCAGACCATTAGTGTTGAGTGTGTTGATGGTCCTGCAACAGTCTTAAATCGTGAACATTATGAAAAGTGTGTGAATGCGTTTCCCCATGATTCACTTTCGAAAGTTCATCTTTGCTATAGGCAGTTCAAAAGCAACCGACTAAAACCCTTTGACCTGAGTAAACTGCGTGGATATTACGATCAGCCAGCCTTCTCTTGTTTGAGTCTCAATGTATTATCGAAATCGGAGCCCATTTTTGATAGTTTGACTGGGGAAGACGATGAAGATTTAGACCCAGAAAATATTGTTAGACCGAAGGTTAAAAGGATGAGGAATGCTACAGGATGTAGAACATTTGAGTTAGAAAATGCAAAAGTTAGAAAGTCCGGTAGTCGACATATGTTGGCCCATAAATCTTGCAAGAAGCATAATTACAGCTTTTTAGGCGGCAGGTTTCTTTCTCATAAACATGTTTTGGAGGATAATGACCCAGCATATGATGTCAATGAGAAGATAGAATTATTGTGTCAAGATAGTGGCATTCGAGGCTGCTGGTTCAGGTGTACGGTCTTGTATGCATCACCAAAACATATTAGAGTACAATATGATGATCTGCAAGATGAGGATGGCTATGGCAACCTTGAGGAATGGGTCCCTGCTTGTAAAGTTGCTCTACCTGATAAACTTGGCATGAGGCACCCTGGCCGCCTGATTACTAGACCAGTCCCTCAAGAGCAAATAGAGCTCACTCTCGATATTGGTGTTGCTGTCGATGCGTGGTGGAGTGATGGGTGGTGGGAAGGAGTAGTTACTGGCCTAGATTCAGGCAATGATGCTGTGCATGTCTACTTTCCAGGTGAAAGCTTATTCTTGAATGTACATAGAACCAATCTTCGAGTATCAAGAGATTGGTTTGGGGGCTGCTGGATTGATGTTGAGGCAAAACCTTCTATACTTTCATTGATATCTGACCGTTATATAATAGACGATGAACGTTCCAAGTCTGTCGCCCATGTCAAATCCAGCAGTTTAGCTATGTCATGCATTGATGTTAATGCTGGCACTAACCTTAGTTACACTAAAGAGGAAACGCTCGAGGAAACTGCATTAGCTAGTCTTGAAAAGCTTCGTGAAGTAAAGGATGGGCCGAAGCAGCCGATGTCGTCATTAGAAGATGACCAGAGTGAGGAGGAGGATGTGGTTGACATGAAAAACAGTAGGCGTAATTTGAAGGACGATAATGGAGGAGGTGATAATAGTAGTAGTGATAGTGAGGATGAAAATGATGAGAATAGCAATGGAGTTAAATCAGAAATGGATTCCATGGATATGGAAGCTGTAGATATTTAG 2106 42.12 MLFLAKRMGHGNYFVEWKEQFVSQERGNRVVHYFLKDSSGESILAVVGTERSVRHMFYVVADEFLQAHGKENSVHSGFKWRSRREVVDWLTSMLSKQHSPGDHSVPCKCDAIQTLGTLQFSHSGLVLQQSDVPDDKVRSSRNSKGPASDIVWSGAAWTCGKRLKHYPSFCRNGTSIVLEIFTSSKFKSMMFHLETNVHSFVYVMAKGENHYLAYLEDMYEDKRGQKKVKVRWFHHSQEVKGVIALRNSHPREVFITPYVQTISVECVDGPATVLNREHYEKCVNAFPHDSLSKVHLCYRQFKSNRLKPFDLSKLRGYYDQPAFSCLSLNVLSKSEPIFDSLTGEDDEDLDPENIVRPKVKRMRNATGCRTFELENAKVRKSGSRHMLAHKSCKKHNYSFLGGRFLSHKHVLEDNDPAYDVNEKIELLCQDSGIRGCWFRCTVLYASPKHIRVQYDDLQDEDGYGNLEEWVPACKVALPDKLGMRHPGRLITRPVPQEQIELTLDIGVAVDAWWSDGWWEGVVTGLDSGNDAVHVYFPGESLFLNVHRTNLRVSRDWFGGCWIDVEAKPSILSLISDRYIIDDERSKSVAHVKSSSLAMSCIDVNAGTNLSYTKEETLEETALASLEKLREVKDGPKQPMSSLEDDQSEEEDVVDMKNSRRNLKDDNGGGDNSSSDSEDENDENSNGVKSEMDSMDMEAVDI 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7982906 7988248 - CmaCh01G010840.1 Cma01g01084 286777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01084 701 Gene3D - 142 325 IPR043151 -
Cma01g01084 701 MobiDBLite consensus disorder prediction 652 666 - -
Cma01g01084 701 CDD BAH_plant_1 169 317 - -
Cma01g01084 701 PANTHER OS07G0607300 PROTEIN 10 678 - -
Cma01g01084 701 MobiDBLite consensus disorder prediction 628 701 - -
Cma01g01084 701 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 678 - -
Cma01g01084 701 SMART BAH_4 193 312 IPR001025 GO:0003682
Cma01g01084 701 Pfam Agenet domain 422 475 IPR008395 -
Cma01g01084 701 SMART agenet_At_2 501 558 IPR014002 -
Cma01g01084 701 MobiDBLite consensus disorder prediction 628 643 - -
Cma01g01084 701 Pfam BAH domain 197 303 IPR001025 GO:0003682
Cma01g01084 701 ProSiteProfiles BAH domain profile. 193 312 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01084 - - - csv:101209069 1118.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01084 Cma-Chr1:7982906 Cma15g00907 Cma-Chr15:4694294 3.64E-96 dispersed
Cma01g01084 Cma-Chr1:7982906 Cma09g00996 Cma-Chr9:5083251 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g638 . . Bda07g00399 . . . . . . . Cma01g01084 . Car01g00960 Car09g00907 . . Cpe02g00814 . . . . . . . . . . . . . . Cone6ag0017 Cone9ag0016 . . . . . . . . . . Bpe11g00579 . . Bma14g00175 . Cmo01g01130 Cmo09g00997 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003848 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01084 Cma_Chr01 FPKM 9.938903 10.448786 9.645807 11.195534 10.471618 10.050188 10.989039 11.061367 10.981926 12.484692