Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01088 ATGGCGCTCCAGTCTTCGATTTTGGGTCCGCCCGCCTTCTCTATTGGCACGAAACCCTTTTCTCTTCTGCATTGCTATCGATATAAGGCTGTACCAGTAAGGATTTTTCGGAGTAATAATCGGTACCCTAGTCTTTATTCGTCGAATTGCGTTCAATTTCGTAGTTCTGGAAGCATTTTGTGTACAGTTTATGAAGAAACTGATGCGTTTGCAAATGGAGCTCGTTTGGGATGTGGGGTTAGTGCGAACTCGAACTGTTCAAGTGTTCCTGAGCCGAATCGAGATTTTGTTAGAGAAATTGCTAAGCGTGGGGTTGTTTTCACTGCAATTGTGTATGGTGTGCTCGTTGTTGGCTGTAAAAATGTATTGGCAACTGAGGGTATGGTTAGTTTTGGCAGGGATGTTGTTGGGCAGGGGATATTGTCGTTTAGAAATGCGTGGCCAAAAGCGTTGTTGGTCCTTAAGATTTTCAAGGAGCAGGGTTTGATTTTGGCTTTGCTTTTAGGACTCTCTGCGTTTTTCTCTATGGCTGAGACTTCAATAACCACACTATGGCCTTGGAAGGTACGTGAATTGGCTGAAAAGGAACCTGAAGATGGTGTCTTCAAAATGCTTCGTACTGACGTTACAAGATTTCTCACGACCATACTTATTGGCACAACTGTGGTAAATATTGGGGCAACTGCGTTAGTCACAGAGGCTGCAACTGCAATATTTGGGGAAGCTGGTGTTAGTGCAGCAACTGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAACTCACTCCAAAAAGTATTGCCGTGCATAATGCTACAGAGGTTGCTAGAATTGTGGTCAGGCCAGTGGCATGGCTTTCGGTGATACTTTACCCAGTTGGAAGAATTGTCACCTATCTATCAATGGGGATGCTTAAAATAATTGGTATGAAAGGGAGTAGTGAACCATTTGTAACTGAGGAGGAACTAAAATTGATGTTGCGAGGGGCAGAACTGAGTGGAGCCATAGAGGAGGAAGAGCAGGATATGATTGAGAATGTTCTTGAGATAAAAGATACACATGTTAGAGAGGTGATGACACCTCTTATCGACGTGGTTGCAATAGATGGAAGTGCCACACTCGTTGACTTCCACAAGTTGTGGGTGACTCATCAGTACTCAAGGGTACCTGTTTTTGAGCAGCGCATAGATAACATTGTTGGGATTGCATATGCAATGGATTTGCTAGATTTTGTACAGAAGGGTGAAGTACTAGAGAGCACTACTGCCGGGGATATGGCCCACAAACCTGCTTACTTTGTGCCTGATTCAATGTCAGTCTGGAATCTTCTCCGAGAGTTCCGTATCCGGAAAGTTCACATGGCTGTTGTGCTTAACGAATATGGCGGCACAGTTGGAATTGTAACACTGGAAGATGTGGTTGAGGAAATTGTAGGTGAAATCTTTGACGAAAACGATTCAAAGGAGGAGATCCAGAAGAAAACTGGCTACATTGTGATGCGAGCCGATGGAGTATATGATGTGGATGCTAATACCGCAATCGATCAGCTCTCTGAAGATCTAAATATCAAAATGCCAGAGGGTCATCAATATGAAACGGTGTCGGGTTTTGTTTGTGAGGCTTTTGGATATATCCCAAGGACGGGTGAAAGCATTAAAGTGGTCCTTGAAAAGGAAGATGAAGAAGCAGAAGAGTCAAATTCTGAAAACAAAAATAAGAAGCAAAGACGCCTAATCTTTAATATCGAGATATTAGCAGGAAATGCTAGAAAGGTTAGTGCTGTTCGGTTTGAACGGGTGAATGACAATAAAGGTGAGGTGGCTCATCTTGTCCCTAAAGTCATGGAGAAGAAATGGAGCAGTAATGGGGAGTCTGGTAGTGTAGAAAATGATAACATATTATCAGAGAGACTTGATGACAGCCTCTCTAGATTGCACCAAAACGATGATCATAGCAAATGGAAAAATAAGCCTGTTTGCTCAGACCACGCAGCTGAATTGGATGCTCGTATCGACTCAGACGACAGTCGTCTAAATCTCTCTTGCAGCAAAGCAATGGAGGAGTTCATTTCTCTGGCATTACAGTTTTCACTACTCATTCTCAAAAGAAAAGGAACCAAAAAAAAAACACGAAAATCGATCTCCGACTCTTCACGTCTTCGCCAACGAGACCTATCAGGTAGCTGTTTGAGGAATATTTTTGAATCCCCGAATCGCGAAAGTAAAGGGAAGAAGCAGGTGGGGGAAAGATGGAAAGGCCAAGTAGAGAGTTCCAAGGAGAGAGATGGATTGAGAGGCAGGAAT 2301 43.37 MALQSSILGPPAFSIGTKPFSLLHCYRYKAVPVRIFRSNNRYPSLYSSNCVQFRSSGSILCTVYEETDAFANGARLGCGVSANSNCSSVPEPNRDFVREIAKRGVVFTAIVYGVLVVGCKNVLATEGMVSFGRDVVGQGILSFRNAWPKALLVLKIFKEQGLILALLLGLSAFFSMAETSITTLWPWKVRELAEKEPEDGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTELTPKSIAVHNATEVARIVVRPVAWLSVILYPVGRIVTYLSMGMLKIIGMKGSSEPFVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHKLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDFVQKGEVLESTTAGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRADGVYDVDANTAIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVLEKEDEEAEESNSENKNKKQRRLIFNIEILAGNARKVSAVRFERVNDNKGEVAHLVPKVMEKKWSSNGESGSVENDNILSERLDDSLSRLHQNDDHSKWKNKPVCSDHAAELDARIDSDDSRLNLSCSKAMEEFISLALQFSLLILKRKGTKKKTRKSISDSSRLRQRDLSGSCLRNIFESPNRESKGKKQVGERWKGQVESSKERDGLRGRN 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8008478 8020042 - CmaCh01G010880.1 Cma01g01088 286781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01088 767 MobiDBLite consensus disorder prediction 736 767 - -
Cma01g01088 767 SMART CorC_HlyC_2 498 600 IPR005170 -
Cma01g01088 767 ProSiteProfiles CBS domain profile. 425 483 IPR000644 -
Cma01g01088 767 SUPERFAMILY CBS-domain pair 341 480 IPR046342 -
Cma01g01088 767 Pfam Cyclin M transmembrane N-terminal domain 162 339 IPR002550 -
Cma01g01088 767 Coils Coil 555 577 - -
Cma01g01088 767 SUPERFAMILY FAD-binding/transporter-associated domain-like 496 603 IPR036318 GO:0050660
Cma01g01088 767 ProSiteProfiles CBS domain profile. 358 419 IPR000644 -
Cma01g01088 767 PANTHER BNAC03G73630D PROTEIN 1 646 - -
Cma01g01088 767 CDD CBS_pair_CorC_HlyC_assoc 353 474 IPR044751 -
Cma01g01088 767 Gene3D - 495 595 IPR016169 -
Cma01g01088 767 MobiDBLite consensus disorder prediction 734 767 - -
Cma01g01088 767 PANTHER HEMOLYSIN-RELATED 1 646 - -
Cma01g01088 767 ProSiteProfiles CNNM transmembrane domain profile. 153 339 IPR002550 -
Cma01g01088 767 SMART cbs_1 363 412 IPR000644 -
Cma01g01088 767 SMART cbs_1 429 477 IPR000644 -
Cma01g01088 767 Gene3D - 333 488 IPR046342 -
Cma01g01088 767 Pfam CBS domain 354 412 IPR000644 -
Cma01g01088 767 Pfam CBS domain 423 477 IPR000644 -
Cma01g01088 767 Pfam Transporter associated domain 499 599 IPR005170 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01088 - - - bhj:120084424 1163.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01088 Cma-Chr1:8008478 Cma09g00990 Cma-Chr9:5056391 0 dispersed
Cma01g01088 Cma-Chr1:8008478 Cma19g00517 Cma-Chr19:6055358 3.13E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01088 Cma_Chr01 FPKM 7.902699 6.926854 9.692546 10.346391 17.451324 13.612409 15.867468 11.508298 11.748775 11.891023