Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01099 ATGCCAGAGAAAGACAGTCAATGTGTTGCTAAACAGCCACGTCTTGTGGCTAGAAAGTTTCTGGCTAGGCCTCAACATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGATTTGAGCTGAAATACTTCGACCCTTTTCTGGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCTGATCATCCACATAGAGGATTTGAGACAGTGACCTACATGTTACAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATTGGTGCAGGTGACTTGCAGTGGATGACTGCAGGTAGAGGTATTGTACATTCAGAAATGCCTGCAGCTCAAGGAACCCAACAGGGCCTCCAACTATGGATCAACCTTTCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAATTTCAAGCAAGGAAATCCAAGAAGCTACAAAAGATGGAGTGACAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCCACACAAGAACACCAACCATGTACTTAGACTTCACTCTCAACCCAAAGGCTCATCTCCATCAGCCGATCCCGTCATCCTGGAACGCGTTTGTTTACATTCTCGAGGGCGAGGGCGTCTTCGGCAGTTCGAAGGCGACGTCGACGACAGCACATAACCTTCTTCTGCTCGGGTTCGGGGACGGTTTAGACGTGTGGAATAAGTCAGCCAAGGCTGTAAGGTTCATCTTGGTAGGAGGTGAACGATTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAACAAATTGACCAAACCATTGATGATTTTGATAACTATACCAATGGGTTTGAGAAAGCAAGGCATTGGAGATCACAAGCTGCAATTTCACTTGGCTTCTAA 906 46.03 MPEKDSQCVAKQPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQQGLQLWINLSSKNKMIEPNYQEISSKEIQEATKDGVTVKVIAGEALGAKSPIHTRTPTMYLDFTLNPKAHLHQPIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGFGDGLDVWNKSAKAVRFILVGGERLSEPVVQFGPFVMNTQEQIDQTIDDFDNYTNGFEKARHWRSQAAISLGF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8058082 8062387 - CmaCh01G010990.1 Cma01g01099 286792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01099 301 Pfam Pirin 34 126 IPR003829 -
Cma01g01099 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Cma01g01099 301 CDD cupin_pirin_C 176 251 - -
Cma01g01099 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Cma01g01099 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Cma01g01099 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Cma01g01099 301 PIRSF Pirin 12 292 IPR012093 -
Cma01g01099 301 CDD cupin_pirin_N 33 128 - -
Cma01g01099 301 PANTHER OS09G0484800 PROTEIN 6 298 - -
Cma01g01099 301 PANTHER PIRIN-RELATED 6 298 IPR012093 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01099 Cma16g00937 CCT
Cma01g01099 Cma09g00981 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01099 Cma-Chr1:8058082 Cma16g00937 Cma-Chr16:7193013 1.41E-165 dispersed
Cma01g01099 Cma-Chr1:8058082 Cma09g00981 Cma-Chr9:4993888 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01099 K06911 - csv:101216351 552.362