Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01100 TTGGCTACTTCAGTGATCTCCGGCTTTGTTCTTCCGGTCAACAGCTGTCAATTTTCCGGCGGAGGCGCTCTGAATTTCTCCTTCTCTACGATGAGTCGCTGGAGGAATTTTCCGGCAATGTGTTCCTCTTCTCGTACTTTCCTTTTGCTGTTTCCTCTGCTTCTTCACTTGTTCGTGGCGCTGGTCTCTGCTCAGGGCTCTAATAATACCTCTCCATGGCAGACTCTGAGTGGAAATCCTCCATTCGTTGTGGCTCGCGGTGGATTTTCAGGGATTTTTCCTGATTCGAGCGGAATCGCCTACAATTTTACACTAATGGTTAGTGTACCAGATGTGATCTTATGGTGTGATGTGCAATTAACTAAAGATGAAGTCGGAATTTGTCTCCCGGATCTGAGGCTCAACAATGCTACTGACGGTGCGAATGTTCTGGCGAAAAACCGCAGCAGTGTCTATGTTGTTAATGGAGTTCATACTGAAGGATTGTTCACAGTCGATTTCAATTCTAAAGATCTGGAAAATGTTACTCTTACTCAAGGAATCTACTCTCGACCTGACAATTTTGATGGCAATGATTTTGCTATTCTCGGTCCTGAAGATGTGTATGAGCAGTTGAATCCACCAGGACTTTGGCTGAATATTCAGCATGATGCATTCTACACTCAACGAAACTTGAGCATGAGGAACTTCATACTTTCTGTAACGAAACGCATCACTGTTAACTACATATCATCACCAGAGGTGGGATTTCTTAAAAGCATATCTTCAAGAATCGAACCCCACAAAACGAAGTTGATCCTTCGGGCATTAGGACCAGCTACTATTGAGGTTACCACCAATCAAACATACGCCACTCTCCTACGCAACCTCACTTTTATCAAGACATTTGCCTCTGGAATTATTGTTCCCAAGACCTATATACGGCCCATTGATGGCGATGGCTACCTACAACCTGAAACCTCTCTTGTTTCTGATGCTCATAAAGCAGAGCTGGAAGTTTTTGCTTCAGAGTTCTATAATGACCTTCCACTGAGCTACAACTACAGCTATGATCCCATTACTGAGTACCTGTCGTACTTCGACAATGGCAGATTTTCAGTTGATGGTGTGCTCACTGATTTCCCTATTAGTCCTTCCGCAGCTATTGATTGTTTTACTCATTTGGATGATAAGGCAAAAAGTCAAGCCAAGCCTTTGGTTATTTCCAAATTTGGAGCCAGTGGAGACTTTCCTGCTTGCACAGACTTGGCGTATTCCAAGGCTATATCAGATGGTGTAGAAGTGCTCGACTGTCCTGTTCAAATGACAAAAGATGGGACGCCATTTTGCATGAGCTCAATCAATCTTATTTACAGCACAACAATATCTCAAACACCATTCATTAATCGTTCAAAAACAATTCCCGCCATTTGTTCTGAGAATGGAATCTTTGCTTTTGACTTAACATGGGAAGAGATTCAAGGCCTCACCCCTTCAATATCGAACCCTTTTTCAAATTTCACGTTGTTTCGAAACCTGAGGTTCCGAAACAGTGGGAAATTCTTAACGCTACCGGATTTCTTGGCCTTGGCAAAGAATGGGAGATCTCTTTCCGGTGTCTTGATCCATATTGAGAATGCAGAATACCTTGCTAAGGAACAGGGTTTAAGTGTAATCGATGCGGTCTCTGATTCCTTGAGCAAAGCTGGTTATGATAATCAGACAGCCCTGAAAGTATTGATTCAGTCTCCAAATAGCCCTGTTCTTATAAAATTCAAAGAGGAAAAGAAAAATTACGAGCTTGTTTATGAAGTCGATATGGCAATTAGTGATGTGCTTAATGAAACTGTCGTGGACATCAAGAGTTTTGCCGATTCTGTCACTATCAACAAGGACTCAGTCTTTCCTGAAAACCAGCAATTTCTCACTGGATCTACAAATGTTGTGACGAAGCTGCAATCACTTAATCTGTCTGTATATGTGGAAACCTTCAGCGATGAATTTGTCTCTCAAGCATGGGATTTCTTCTCTGATGCAACAGTAGAGATCAACTCATATGCTATGGGAGCCGGGATTGATGGAATCATCACCGATTTTCCGAAGACATCTGCTAGATATAAGAAGAACAGATGCTTAACAATGAAAGAGCTACCTAACTACATGATCCCTGTCCAGCCTGGTAGCTTGTTGCAGCTCGTTACAGAGGGGTACTTGCCTCCAAAGAAAGCTCCAAGGCCGGTTCTGGGTGACAAAGACATAGCTGAGCCACCATTGTCTCCAGTCTCGAGCAAAGCCCCACCACCTGCTGGGGAAGGTGGCTCCGCCGCATCACCTCCAGCTCCTTCACATAATGGACAACCTAAGCTTGGAGCTGGGGCAGGCTTCTTGCTCTTCAACCTTGCCATACTTTGCATAGCTCTTCTGCCATTCTGA 2412 43.7 LATSVISGFVLPVNSCQFSGGGALNFSFSTMSRWRNFPAMCSSSRTFLLLFPLLLHLFVALVSAQGSNNTSPWQTLSGNPPFVVARGGFSGIFPDSSGIAYNFTLMVSVPDVILWCDVQLTKDEVGICLPDLRLNNATDGANVLAKNRSSVYVVNGVHTEGLFTVDFNSKDLENVTLTQGIYSRPDNFDGNDFAILGPEDVYEQLNPPGLWLNIQHDAFYTQRNLSMRNFILSVTKRITVNYISSPEVGFLKSISSRIEPHKTKLILRALGPATIEVTTNQTYATLLRNLTFIKTFASGIIVPKTYIRPIDGDGYLQPETSLVSDAHKAELEVFASEFYNDLPLSYNYSYDPITEYLSYFDNGRFSVDGVLTDFPISPSAAIDCFTHLDDKAKSQAKPLVISKFGASGDFPACTDLAYSKAISDGVEVLDCPVQMTKDGTPFCMSSINLIYSTTISQTPFINRSKTIPAICSENGIFAFDLTWEEIQGLTPSISNPFSNFTLFRNLRFRNSGKFLTLPDFLALAKNGRSLSGVLIHIENAEYLAKEQGLSVIDAVSDSLSKAGYDNQTALKVLIQSPNSPVLIKFKEEKKNYELVYEVDMAISDVLNETVVDIKSFADSVTINKDSVFPENQQFLTGSTNVVTKLQSLNLSVYVETFSDEFVSQAWDFFSDATVEINSYAMGAGIDGIITDFPKTSARYKKNRCLTMKELPNYMIPVQPGSLLQLVTEGYLPPKKAPRPVLGDKDIAEPPLSPVSSKAPPPAGEGGSAASPPAPSHNGQPKLGAGAGFLLFNLAILCIALLPF 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8063260 8070561 - CmaCh01G011000.1 Cma01g01100 286793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01100 803 Gene3D Phosphatidylinositol (PI) phosphodiesterase 396 699 IPR017946 GO:0006629|GO:0008081
Cma01g01100 803 Gene3D Phosphatidylinositol (PI) phosphodiesterase 80 378 IPR017946 GO:0006629|GO:0008081
Cma01g01100 803 CDD GDPD_SHV3_repeat_1 81 381 - -
Cma01g01100 803 Pfam Glycerophosphoryl diester phosphodiesterase family 405 695 IPR030395 GO:0006629|GO:0008081
Cma01g01100 803 Pfam Glycerophosphoryl diester phosphodiesterase family 116 375 IPR030395 GO:0006629|GO:0008081
Cma01g01100 803 ProSiteProfiles GP-PDE domain profile. 81 382 IPR030395 GO:0006629|GO:0008081
Cma01g01100 803 MobiDBLite consensus disorder prediction 737 778 - -
Cma01g01100 803 ProSiteProfiles GP-PDE domain profile. 398 700 IPR030395 GO:0006629|GO:0008081
Cma01g01100 803 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 54 780 - -
Cma01g01100 803 CDD GDPD_SHV3_repeat_2 398 699 - -
Cma01g01100 803 SUPERFAMILY PLC-like phosphodiesterases 79 376 IPR017946 GO:0006629|GO:0008081
Cma01g01100 803 SUPERFAMILY PLC-like phosphodiesterases 397 699 IPR017946 GO:0006629|GO:0008081
Cma01g01100 803 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 54 780 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01100 Cma09g00980 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01100 Cma-Chr1:8063260 Cma03g00774 Cma-Chr3:6014474 1.63E-179 dispersed
Cma01g01100 Cma-Chr1:8063260 Cma09g00980 Cma-Chr9:4982997 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01100 - - bhj:120086180 1173.3