Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01101 ATGGGAGTGCTCGAAACTGTCAAGAACATCGGCAGCGACCACGCCCCGGTCGTCCCCTTGACGTTGTTCGTTGCCGTTCTTTGTTTATGCTTGGTTATTGGCCATTTGCTCGAAGAAAATCGTTGGGTTAATGAGTCCATCACTGCCATTATCATTGGAGGTGTTACTGGCACGATCATATTGGTCTGTAGCAAGGGAAAAGATTCTCATATCCTAACTTTTAATGAGGAAGTGTTCTTCATGTATCTCCTTCCCCCAATAATTTTCAATGCTGGATTTCAAGTTAAAAAGAAGCAGTTCTTCCACAACTTCTTGACCATTATGCTGTTCGGGGTGATTGGTGTTTTTATATCTGCACTCATTATAACATCTGGTAGCCAGTGGCTGTTTACAAGGATGGGCTTCCATGGTCTGTCCGCACGAGACTATATTGCTATAGGTGCTATTTTTTCATCCACGGACACAGTATGCACTCTGCAGGTACTACACCAAGAGGAAACGCCTTTACTCTACAGTCTAGTCTTCGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTGCAGAAGATTGACATCACTAGGCTTAACAGCAAGACAGCCCTTCATGTGTTTGGAGATTTTTGTTACTTATTTTCAACTAGCACCATCCTTGGAGTGACCGCTGGGCTTCTAACAGCATATATCCTGAAAACCTTATACTTCGGGAGGCATTCAAGTGTGCGTGAGCTTGCGATAATGGTTTTAATGGCTTACCTTTCATACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGGGTTATCATGTCGCACTATGCATGGCATAATGTGACTGATAGTTCAAAGATAACCACCAGGCATGTATTTTCAATGATGTCGTTCGTTGCTGAAACTGCAATATTTCTTTACGTGGGCATGGATGCTCTTGACATAGAGAAGTGGAAGATAACTAAATTAAGCTTGTGGAAGTTGGTTGGTACATATAGCATAACAGTCTTCTTGATATTGCTTGGTCGTGCGGCCTTTGTATTCCCCCTATCTGCCATATCGAATTACTTCAATAAGTGTGAAGATAGATCGTCATCATCTTCTATAATCACATTTAAACAACAGATCATAATATGGTGGGCTGGACTGATGAGAGGAGCTGTATCTATTGCTCTGGCTTTCAAACAGTTCACCTATTCTGGGGTTACACGGGATCCAACCCACGCAACAATGATTACCCTCACCACGGTTGTGGTGCTCTTCACTACGGTGGTATTTGGGTTTCTAACAAAGCCGCTCATAAGATGTCTACTTCCACTCAACCAAGCAACTAATGGTGCAAGCAGCAACTCCGGTCCGAAGTTCACCGAAGAGGACATAACTCTCCCTTTGCTTTCCATGAAAGAGTCTGCTGCAACCAATGTCCTCCGTGCAAAGGATAGTTTGTCGATGTTAATGGAGAGACCTGGCCTCGCCACGGCAACCAACCTAGTGGTTCTGGTTGTTAGGAAAAAAACCGTGGGAACAGCAACGTTGATCGAACAAGGATACAAATTGGGAAGGTTGGGCCTGGTTCGTGGAACACATGGAAGAGCTCAATATCGTAGTGTTTGTCTTTGA 1641 43.88 MGVLETVKNIGSDHAPVVPLTLFVAVLCLCLVIGHLLEENRWVNESITAIIIGGVTGTIILVCSKGKDSHILTFNEEVFFMYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISALIITSGSQWLFTRMGFHGLSARDYIAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNSKTALHVFGDFCYLFSTSTILGVTAGLLTAYILKTLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTDSSKITTRHVFSMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLVGTYSITVFLILLGRAAFVFPLSAISNYFNKCEDRSSSSSIITFKQQIIIWWAGLMRGAVSIALAFKQFTYSGVTRDPTHATMITLTTVVVLFTTVVFGFLTKPLIRCLLPLNQATNGASSNSGPKFTEEDITLPLLSMKESAATNVLRAKDSLSMLMERPGLATATNLVVLVVRKKTVGTATLIEQGYKLGRLGLVRGTHGRAQYRSVCL 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8073976 8083094 + CmaCh01G011010.1 Cma01g01101 286794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01101 546 Pfam Sodium/hydrogen exchanger family 23 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma01g01101 546 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma01g01101 546 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma01g01101 546 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma01g01101 546 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma01g01101 546 Gene3D - 139 191 - -
Cma01g01101 546 PANTHER SODIUM/HYDROGEN EXCHANGER 9 497 - -
Cma01g01101 546 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 20 444 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma01g01101 546 PANTHER SODIUM/HYDROGEN EXCHANGER 9 497 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01101 Cma-Chr1:8073976 Cma10g01092 Cma-Chr10:7256436 0 dispersed
Cma01g01101 Cma-Chr1:8073976 Cma08g01201 Cma-Chr8:7385483 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01101 - - csv:101217775 857.825