Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01105 ATGGCGTCTTCGGACGACGAGGCGGAGGCCTTGCCACTTTGTGTTTCAAATTATCACTTCGTGGATCATAAGGAAGAACCTGTTTCATTCTCCATTTTGCCGATTATATGGGATGAAGTGGACAGATTGGATGGCGGCCAAGAACCTGTTTTCCTGCATGGAACAGCTGATGATGGACTTCAAAAGGTTTATAAACAGGTAACTGCATGGAGGTTTGATGTTTGTGGTATAAATCCAGAGATATCGGTGCTTTCCAAAGAAAACGTGTGGATTAAGCTTCAGAAGCCAAGAAAGAGCTTTGAGGATACTATTAGAACCATCTTGATTACAGTACAATGCCTTCATGTTTTAAAGAGAAATCCAGACACACCTAGCAAATCTTTGTGGGATCAATTAGCCAAAATCTTCAGCTTGTATGAGGTGAGGCCTTCACAAAATGATTTGGTGGATCACATGTCTCTAATCAGTGAAACTGTCGAAAGGGATGATCAATTGGCAAAGTCCCAGTTCTTACTTGCATTCCTGGAAGAGAAGCCCATTAAGAAAAGGTCATGTCACGAGGATGTTCAATGTACAGCGAGGCCTAGTTTTATAGTTGATGATTTAGATGATGAGGACATGGTTGATGATGCTATTGAAGAGAGTGATGATGACGTTTTTGACTCCGTCTGTGCATTTTGTGATAATGGTGGTAACCTTCTATGCTGTGATGGGAGGTGCATGAGGTCCTTTCATGCAACTGAAGAGAATGATGATGAATGTTTGTCACTTGGTCTCTCGAAAGAAGAAGTAGATGCAATTGAAAACTATTTTTGCAAGAATTGCGAGTATAAACAGCACCAATGTTATGCTTGCGGGAATTTAGGTTCATCTGATAAAGCTTCTGGTGCTGAGGTATTCCAATGTGTAAATGCAACTTGTGGTCATTTTTATCATCCTAAATGTGTTTCAAAATTGCTTCATCGTGAAAATAAAATTGCTGCTGAGGAACTTGAGAGGAAGATTGCTTCTGGAGAATCTTTTTCTTGCCCTGTGCATAAGTGTTCTGTTTGTGAACTTGGTGAAAATAAGAAAGTACACGAATTACAGTTTGCTGTTTGCCGTCGTTGCCCAAAATCCTATCACAGAAAATGCTTACCAAGGAAGATCACTTTTGAAGATTCAGACGATGATGAAACCACAACCAGGGCATGGGAAGGGCTATTACCTAATCGCATATTGATATATTGCTTAGACCATGATATCAATGAGGACATTGGGACTCCAGACAGGGACCATATTAAATTCCCTGGAATTGAAAAGAGTAAAATTCCCATCCAGCAAAAGAAAATTTCTACAGTTGATACAAGAAAAGGGAAAACAATAGATTTTCGTGGGATTAGGGAAAGAGTTGTATCAAAAAAGGAAAATATGTCAGATGACCATTTTCAGGGAAAATCTGCTGCAAAAGTATCGAAATCATTTGAAAGGTTCTCATCTGAAGGGAAGGTTCTTAGCAAAGAAGCTGAGAAATCATTGTTGGGCTCTGAATCTAGAAAAGTGAAATTAGGTAATGTTTCAAGAAAGTCTTTGAATCAAAATACAGAATCTGTCCGCATGGACATTGATAAGACTATCAAAGGTAAAAAATCCTCAGTTGTAAAGTCTGCCGCATCAACCAAGAGGTCTGATCAAAATAAGGCTTCCAAGGAGGATAACAGTGAACTGGGCAAGTCTGACACCTCTAAGCCTCTGACAAAGAAGTTGAACAGTGGGATGGTTCAATTAGATGCCGATACGGAGAGGAGGCTAATGGATTTAATGAAAAATGTTGCATCTTCAATTACTTTAGAGGACGTAGTTCAGAAACACAAAGTACCATCTACTCATGCATACTCTTTAAAAAATGTTGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGTTCAGTTGAGGCTGTTCGAGCTGCTTTACGCAAGCTTGAAGAAGGATGTAGCATTGAGGAAGCAGAAGCTGTTTGTGAGCCTGAAGTTCTTTATCACATATTTAAGTGGAAGAACAAACTGAGAGTATATCTTGCACCGTTTCTTTATGGCATGCGCTACTCCTCCTTTGGTCGTCATTTTACAAAAGTTGAGAAACTTCAGGAGATTGTTGATAGGCTTCATTGGTATATACAGAAAGGCGATACAATAGTGGATTTCTGCTGCGGTGCTAATGATTTTAGCATTTTAATGAAGAAAAAACTTGATGAGACGGGTAAACCATGCTCGTACAGAAACTTTGACTTTATTCCACCGAAGAATGATTTCAATTTTGAGAGAAGGGATTGGATGACTGTGCAACCCAAGGAATTGCCTAAAGGATCTCAATTGATCATGGGGCTAAATCCTCCATTTGGAGTTAAAGCTGCTTTGGCAAACAAGTTCGTTGATAAGGCTCTCGAGTTTAAGCCAAAGCTCGTTATTCTTATTGTTCCTCCTGAAACCGAGAGGTTGGATAAAAAAAAGACTCCTTATGACCTGGTTTGGGAGGATAATGAGTTTTTGTCAGGAAAGTCATTTTATCTTCCTGGATCTGTCAATGCAAAAGACAAGCAGATGGATCAGTGGAATGTCAGGCCACCTGTGCTCTATTTGTGGAGTCGTCGTGACTGGGCCGATAAACACAAAGACATAGCACAAGAGCACGACCATCTCCGCCCCCGGAAACAAGAGGAATCAGAAAAAGAGAAGACTTCTGATACCTCAAGGGTGAGGCAACCAGAGGAATCTGAAAAGGGAAAGAGTTCTGATTTGTCTAGGCTAAGGCAAAAAGAGGATTCAGGAATGGGATTAGGATCTGAAACCTCAAGGCCAAATCAAATGGAGTCGGAAAAGGGCCGAAGCTCCAAAACTTCTGATGATCATATTCATCTCAATGATACATTCCTGTTGGAATCTGTAATGTCAGCAGATGAACCAGAAGATTCCAAGAGTGGATCGGTCTCCTGTGACGTTCATAAAAATGGGTCCATGAAAGCATCGAAGAGGGATAACGACAGAGAGAGTCATGACAGTCGAGACCGCCGTACTAATCTGTCTCCTGAGGCTCCAAGAAAGAGGCAGCGTTTCGAAGAAATACCTAGAAGAGGTGATGGTGAGACATCAGAAGAGAGCCGACGTGATGGTAAAAGGCCTTCTCCAAATGTGAGTGATCGTAGATCCTCGTTGGCTGGTTTATTGTCCAGTTCTGAGGTGGGAGGGATTGGACATCAGCAGTCGGGGTCGACTAAGCCTGGTTTCGATGCTAACTTCCAAGCTGCTAATAAAGCAGCAGCACGAACTAGCGTAACTAACGACGTTGCTCGATATGCTGCTGTGGGAGGAATTGGACATCAGCAGTCGGGGTCGACTATGCCTGGCCAGAATGCCAACTTCCAAGCTGCTAATGAAGCAGCACGAAGTAGCGCAACAAACGACATTGCTCGATATGCTGCTGTGGGAGGGATTGGACATCAGCAGTTGGGGTCGACTGTGCCTGGCCAGAATGCCAACTTCAGAGCTGCTTATGATGCAGCACGGACCAGCTCGACGGATGCCATTGCGAGAAAGTACAACCAGGAGCCTCATCTAATTGGGACAAGTGGATGGTCAAACAATACAAGCCTCAGTTCTGAAATTGGGTCTAGACACTTTGAGGACCGTATCATCGATCAAATGGGACGACATGCTGATGGCCTTAATTATGCACCCTACACTACTGGGCACAACGCATACACGAGGGACTTAGAAATACGATCACAACTTCGTCGTTACGGGAATATGGATACCGATAATTTAAGAAGCAATTATCAAGCTGGACCTGAACCTGGGTATATTAACAGGATTGGGTCATTCCCACCTACCTATGGGCATCTGGGTACGCCCTCTGAACCATCTCACTGGATGAACACTTCAGCAACGCAACGATACATGCCTCGACTCGATGAGTTGAACCACACCAGATTGGCAGGAATGGGCGCTGGGCATCAGATGAATGGCAGTGGCACTATCGACCCGAGATCTCACCTGCCCCCTGGTTTCAGGGGTGCGCCACAGGGGTTCGCTTCTGGTCCTCAGTACCCATATTCAAACCAGAATTCTGCTGGCTGGCTTAACGAGTAG 4125 43.15 MASSDDEAEALPLCVSNYHFVDHKEEPVSFSILPIIWDEVDRLDGGQEPVFLHGTADDGLQKVYKQVTAWRFDVCGINPEISVLSKENVWIKLQKPRKSFEDTIRTILITVQCLHVLKRNPDTPSKSLWDQLAKIFSLYEVRPSQNDLVDHMSLISETVERDDQLAKSQFLLAFLEEKPIKKRSCHEDVQCTARPSFIVDDLDDEDMVDDAIEESDDDVFDSVCAFCDNGGNLLCCDGRCMRSFHATEENDDECLSLGLSKEEVDAIENYFCKNCEYKQHQCYACGNLGSSDKASGAEVFQCVNATCGHFYHPKCVSKLLHRENKIAAEELERKIASGESFSCPVHKCSVCELGENKKVHELQFAVCRRCPKSYHRKCLPRKITFEDSDDDETTTRAWEGLLPNRILIYCLDHDINEDIGTPDRDHIKFPGIEKSKIPIQQKKISTVDTRKGKTIDFRGIRERVVSKKENMSDDHFQGKSAAKVSKSFERFSSEGKVLSKEAEKSLLGSESRKVKLGNVSRKSLNQNTESVRMDIDKTIKGKKSSVVKSAASTKRSDQNKASKEDNSELGKSDTSKPLTKKLNSGMVQLDADTERRLMDLMKNVASSITLEDVVQKHKVPSTHAYSLKNVVDKTIKMGKLEGSVEAVRAALRKLEEGCSIEEAEAVCEPEVLYHIFKWKNKLRVYLAPFLYGMRYSSFGRHFTKVEKLQEIVDRLHWYIQKGDTIVDFCCGANDFSILMKKKLDETGKPCSYRNFDFIPPKNDFNFERRDWMTVQPKELPKGSQLIMGLNPPFGVKAALANKFVDKALEFKPKLVILIVPPETERLDKKKTPYDLVWEDNEFLSGKSFYLPGSVNAKDKQMDQWNVRPPVLYLWSRRDWADKHKDIAQEHDHLRPRKQEESEKEKTSDTSRVRQPEESEKGKSSDLSRLRQKEDSGMGLGSETSRPNQMESEKGRSSKTSDDHIHLNDTFLLESVMSADEPEDSKSGSVSCDVHKNGSMKASKRDNDRESHDSRDRRTNLSPEAPRKRQRFEEIPRRGDGETSEESRRDGKRPSPNVSDRRSSLAGLLSSSEVGGIGHQQSGSTKPGFDANFQAANKAAARTSVTNDVARYAAVGGIGHQQSGSTMPGQNANFQAANEAARSSATNDIARYAAVGGIGHQQLGSTVPGQNANFRAAYDAARTSSTDAIARKYNQEPHLIGTSGWSNNTSLSSEIGSRHFEDRIIDQMGRHADGLNYAPYTTGHNAYTRDLEIRSQLRRYGNMDTDNLRSNYQAGPEPGYINRIGSFPPTYGHLGTPSEPSHWMNTSATQRYMPRLDELNHTRLAGMGAGHQMNGSGTIDPRSHLPPGFRGAPQGFASGPQYPYSNQNSAGWLNE 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8093463 8111895 + CmaCh01G011050.1 Cma01g01105 286798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01105 1374 MobiDBLite consensus disorder prediction 1070 1089 - -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 888 1064 - -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 948 968 - -
Cma01g01105 1374 SMART PHD_3 223 276 IPR001965 -
Cma01g01105 1374 SMART PHD_3 348 414 IPR001965 -
Cma01g01105 1374 SMART PHD_3 281 347 IPR001965 -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 518 537 - -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 518 532 - -
Cma01g01105 1374 CDD PHD3_NSD 348 380 - -
Cma01g01105 1374 SUPERFAMILY FYVE/PHD zinc finger 213 285 IPR011011 -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 542 586 - -
Cma01g01105 1374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 278 IPR013083 -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 888 932 - -
Cma01g01105 1374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 395 IPR013083 -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 997 1056 - -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 1358 1374 - -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 557 575 - -
Cma01g01105 1374 MobiDBLite consensus disorder prediction 1335 1374 - -
Cma01g01105 1374 CDD PHD2_NSD 281 346 - -
Cma01g01105 1374 Pfam Cytosine specific DNA methyltransferase replication foci domain 16 136 IPR022702 -
Cma01g01105 1374 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1369 - -
Cma01g01105 1374 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01105 - - - cmos:111445988 2657.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01105 Cma_Chr01 FPKM 12.138832 11.917802 12.240027 11.417441 16.204115 17.556242 16.381733 16.149574 14.408072 14.7955