Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01106 ATGGCAGATGGCCATTCAACACTACCACCGACCTCCGCCGCCGGAAACCTAATGGACGGCGAACTATCCAGCCTCCTCCAGGTATGGTCCATTGCCATTGCTCTCATTTGCTATTCTTACTATGTAGCTTCCAAAATCGCTAAGGGACTTCCCCGGCTCCTCTCTCTCTTCCCCGTCCTCTTCATCTTCCTCCTCCTTCCTCTCAATCTCCACTCCTTCCATTTCGGCGGTCCGACTGCCTTCTTCCTCGCTTGGCTCGGCAACTTCAAACTCCTCCTCTTCGCCTTCGATCTCGGTCCTCTCACCTACTTGCCACTCCCAAGCCTCCTCCACTTCGCCGCCGTGCTCTGCCTTCCGATCAAGATCAAGAAGCAAAAACATCCTGAAGAATCTAAGAATCGAAGAATCGTAGAGCCGATTGTTCTTTCCGTCAAGATTTTGCTTCTAGCGATTATCATTCGGCTTTACAGTTACCGAAATCGTATGAATCCAGCGATGATTTTCGTTCTTTACTGTCTCCATATGTACATCGGCATCGAAATCGTTCTCGCTCTGTGTTCACTTCCATCGAGAGCGATGATTGGAGAGCCGATCGAACCGCAGTTCAACAAGCCGTATCTCTCCACGTCGCTTCAGGATTTTTGGAGTCGTCGATGGAATCTCATGGTTCCAAGTATTCTACGCCCGGCCGTATACGATCCCACCCGTTCCTTAACTTCCCGCATTTTCCGGCCCAAGTGGGCCCAATTTCTGGCCATGGTGGTTACGTTTGCTGTCTCTGGCCTTATGCACGAGTTGATGTATTATTACTTCACACGTGTCGCTCCCACATGGGAAGTCACGTGGTTCTTTGTCCTGCACGGCGTGTGCACTGCGGCGGAGGTGGCGGCGAAGGCTGCGGTGACGGGCCGGAAAATACGATGGCGGGTTCCCCGGGTGTTGTCGGGGCCGATGACGGTGGGGTTTTTGATAGCGACGGCGAGGTGGCTGATGTTCCCTCAGCTGATTCGAAATGGCGTTGTTGAGAGCACAATCGGTGAGTATTATGTTCTAGTCAACTTTATGAAAGACAAATTTGTTTGA 1083 51.71 MADGHSTLPPTSAAGNLMDGELSSLLQVWSIAIALICYSYYVASKIAKGLPRLLSLFPVLFIFLLLPLNLHSFHFGGPTAFFLAWLGNFKLLLFAFDLGPLTYLPLPSLLHFAAVLCLPIKIKKQKHPEESKNRRIVEPIVLSVKILLLAIIIRLYSYRNRMNPAMIFVLYCLHMYIGIEIVLALCSLPSRAMIGEPIEPQFNKPYLSTSLQDFWSRRWNLMVPSILRPAVYDPTRSLTSRIFRPKWAQFLAMVVTFAVSGLMHELMYYYFTRVAPTWEVTWFFVLHGVCTAAEVAAKAAVTGRKIRWRVPRVLSGPMTVGFLIATARWLMFPQLIRNGVVESTIGEYYVLVNFMKDKFV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8113578 8114660 + CmaCh01G011060.1 Cma01g01106 286799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01106 360 PANTHER ACYL-COA--STEROL O-ACYLTRANSFERASE 1 20 358 - -
Cma01g01106 360 Pfam Membrane bound O-acyl transferase family 199 285 IPR032805 -
Cma01g01106 360 PIRSF Wax_synthase 18 360 IPR017088 GO:0008374
Cma01g01106 360 PANTHER LONG-CHAIN-ALCOHOL O-FATTY-ACYLTRANSFERASE 3-RELATED 20 358 IPR044851 GO:0006629|GO:0008374
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01106 - - - csv:101218587 442.965
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01106 Cma09g00979 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01106 Cma-Chr1:8113578 Cma14g00980 Cma-Chr14:5136055 1.27E-83 dispersed
Cma01g01106 Cma-Chr1:8113578 Cma01g01108 Cma-Chr1:8121325 8.61E-49 proximal
Cma01g01106 Cma-Chr1:8113578 Cma09g00977 Cma-Chr9:4956811 1.98E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g590 . . Bda07g00382 . . . . . . . Cma01g01106 Cma09g00979 . . . Cpe06g00789 Cpe02g00794 Bhi09g01707 Tan01g3137 . . . Mch11g1224 . . . . . . . . . Cone9ag0042 . . Lsi02g01871 Csa07g00999 . . . . . . . . . . . Cmo01g01152 Cmo09g00980 . . . . . . . . . . . . . Cla09g01039 Cam09g1094 Cec09g1094 Cco09g1117 . . Cre09g1059 . . Chy01g01067 Cme01g00987
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001163 4 2 0 2 3 2 1 2 2 2 2 2 2 2 2 3 2 3 3 2 2 11 3 2 3 2 4 2 2 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01106 Cma_Chr01 FPKM 7.356417 8.383498 1.189859 1.104343 3.687517 2.896858 4.581273 6.440985 5.118085 5.526489