Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01110 ATGGGATTCTTAGTGACGTCCCTGATTTTCGCCGTGATTGGAGTCATCGCATGTTTTTGCTCTCTAATTTGCTGTAACAGAGGAGCTTCGACTAATTTGTTTCACCTTACTTTGATAACTACTGCAACAATATGCTGCTGGATGATGTGGGCAATTGTATATCTTGCACAAATGAAGCCACTCATTGTTCCAATTCTGAATGACTCGGAGTGA 213 41.31 MGFLVTSLIFAVIGVIACFCSLICCNRGASTNLFHLTLITTATICCWMMWAIVYLAQMKPLIVPILNDSE 70
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8127523 8130542 + CmaCh01G011100.1 Cma01g01110 286803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01110 70 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT H 1 70 IPR008389 GO:0033179|GO:0046961|GO:1902600
Cma01g01110 70 Pfam ATP synthase subunit H 3 67 IPR008389 GO:0033179|GO:0046961|GO:1902600
Cma01g01110 70 PANTHER V-TYPE PROTON ATPASE SUBUNIT E2 1 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01110 K02153 ATPeV0E, ATP6H; V-type H+-transporting ATPase subunit e - csv:101208426 143.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01110 Cma09g00976 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01110 Cma-Chr1:8127523 Cma09g00976 Cma-Chr9:4950327 2.97E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g586 . . . . . . . . . . Cma01g01110 Cma09g00976 . . Sed07g2707 . . Bhi09g01702 Tan01g3133 Cmetu01g0078 . . . . . . . . . . . . Cone9ag0045 . . Lsi02g01876 . . . . . . . . . . . . Cmo01g01154 Cmo09g00975 . . . . . . . . . . . . . Cla09g01037 . . Cco09g1114 . . . . . Chy01g01060 Cme01g00993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008596 1 2 2 2 2 0 0 1 0 2 1 1 2 1 1 2 0 2 0 0 1 1 0 0 0 1 0 3 1 1 30