Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01111 ATGGCGTATACTTTGGAGTCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGAGATCAATGGTATGATTTCTGAGAGAAATTCACTTGCTGCGTCTGGCCCGGAAGCTCAACGTCACGCTTCGGCCATTCGCAGGAAGATCACGATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAACCGTCGCAGGGACATGATAGCAAATTTGAGATCAAAAGCTAACCAGATGGCTTCAGCTTTGAACATGTCGAACTTTGCGAACCGTGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTTATGAACAGAACAGCAGGCTTGGACAACCAGGGCCTAGTTGGTTTTCAACGACAAATCATGAGAGAGCAAGATGAAGGTCTCGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTGGCTGTCAATGAAGAACTTACCCTTCACACCAGACTTATTGATGATTTAGATGAACACGTTGATGTTACAGATTCACGATTACGGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCGATGATTTTATCGGTTGTCGGGATTGTCGTTCTTGTTGCCGTTATATGGCTACTCATCAAGTATTTGTAA 702 44.02 MAYTLESWTKEYNEALKLSEEINGMISERNSLAASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASALNMSNFANRDSLLGPEIKPADVMNRTAGLDNQGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLVAVIWLLIKYL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8131197 8134403 - CmaCh01G011110.1 Cma01g01111 286804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01111 233 SMART tSNARE_6 132 199 IPR000727 -
Cma01g01111 233 CDD SNARE_Qc 140 197 - -
Cma01g01111 233 Pfam SNARE domain 174 224 IPR000727 -
Cma01g01111 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Cma01g01111 233 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 6 228 - -
Cma01g01111 233 Gene3D - 139 201 - -
Cma01g01111 233 SUPERFAMILY SNARE fusion complex 128 199 - -
Cma01g01111 233 PANTHER SYNTAXIN 6 228 IPR045242 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01111 Cma16g00924 CCT
Cma01g01111 Cma09g00975 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01111 Cma-Chr1:8131197 Cma17g00042 Cma-Chr17:187111 3.16E-09 dispersed
Cma16g00924 Cma-Chr16:7034135 Cma01g01111 Cma-Chr1:8131197 8.34E-82 transposed
Cma01g01111 Cma-Chr1:8131197 Cma09g00975 Cma-Chr9:4947413 5.28E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01111 K08503 - csv:101208669 408.683