Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01111 | ATGGCGTATACTTTGGAGTCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGAGATCAATGGTATGATTTCTGAGAGAAATTCACTTGCTGCGTCTGGCCCGGAAGCTCAACGTCACGCTTCGGCCATTCGCAGGAAGATCACGATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAACCGTCGCAGGGACATGATAGCAAATTTGAGATCAAAAGCTAACCAGATGGCTTCAGCTTTGAACATGTCGAACTTTGCGAACCGTGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTTATGAACAGAACAGCAGGCTTGGACAACCAGGGCCTAGTTGGTTTTCAACGACAAATCATGAGAGAGCAAGATGAAGGTCTCGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTGGCTGTCAATGAAGAACTTACCCTTCACACCAGACTTATTGATGATTTAGATGAACACGTTGATGTTACAGATTCACGATTACGGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCGATGATTTTATCGGTTGTCGGGATTGTCGTTCTTGTTGCCGTTATATGGCTACTCATCAAGTATTTGTAA | 702 | 44.02 | MAYTLESWTKEYNEALKLSEEINGMISERNSLAASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASALNMSNFANRDSLLGPEIKPADVMNRTAGLDNQGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLVAVIWLLIKYL | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8131197 | 8134403 | - | CmaCh01G011110.1 | Cma01g01111 | 286804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01111 | 233 | SMART | tSNARE_6 | 132 | 199 | IPR000727 | - | |
Cma01g01111 | 233 | CDD | SNARE_Qc | 140 | 197 | - | - | |
Cma01g01111 | 233 | Pfam | SNARE domain | 174 | 224 | IPR000727 | - | |
Cma01g01111 | 233 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 137 | 199 | IPR000727 | - | |
Cma01g01111 | 233 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 6 | 228 | - | - | |
Cma01g01111 | 233 | Gene3D | - | 139 | 201 | - | - | |
Cma01g01111 | 233 | SUPERFAMILY | SNARE fusion complex | 128 | 199 | - | - | |
Cma01g01111 | 233 | PANTHER | SYNTAXIN | 6 | 228 | IPR045242 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01111 | Cma16g00924 | CCT | |
Cma01g01111 | Cma09g00975 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01111 | Cma-Chr1:8131197 | Cma17g00042 | Cma-Chr17:187111 | 3.16E-09 | dispersed | |
Cma16g00924 | Cma-Chr16:7034135 | Cma01g01111 | Cma-Chr1:8131197 | 8.34E-82 | transposed | |
Cma01g01111 | Cma-Chr1:8131197 | Cma09g00975 | Cma-Chr9:4947413 | 5.28E-154 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01111 | K08503 | - | csv:101208669 | 408.683 |