Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01113 ATGGGTTCCGTTTTGAAGTTCGTCGTGTTTTCGCTTCTATTAGCTTCTGCCTCTTCCCATATCAATTCCAGCGATGAGGGTTTCATTTCGATGGTCGTATCCCAAAAGGGTCTTAACTTCATCAAGGATTTCTTGATAGACAAGGCAATTTCCTCCATCATTCCCCTTCGTTTGCCCAACATTGAGAAGACTGCCAATATTGCTCTTATCGGCAAAGTTCATATGGGTCTTTCCGATATAATCATTGGCAGCATCGAGGTCGAATCGTCGGATATTCGGATCGGTGAGACGGGTGTCAACATAGTTGTTACGAAAGCCACTGCTAATATGAGTATGAAATGGCAATATACGTACAACACTTGGTTGTTCGAAATTTCTGATAAAGGAGACGCCTCTGTTCAGGTTGATGGTATGAATATAGGCCTAACTCTGGGTTTAAATCAACGAAACGGAACTCTTGGGCTGTCTCTTTCAGAATGCGGATGCAATGTCAAACATATCTCCATACACGTGCACGGTGGCGCATCTTGGCTTTACCAAGGGTTGGTTGATGCTTTTGAAGGAAAAATAGAGTCAACAGTTGAAGATAATATTTCCAAAAAAATTAAAGAAGGGGTCGTAAAGCTCGACTCGTCGTTGGGGTCACTTCCACGAGAAATCTCGCTAGCTCATGTTGCGGTTCTAAACGTCACTTTTGTGGGGAGCCCTGTGTTGTCCTCTTCTTCCATTGAATTCAAAATTGATGGTTTATTCAGCCCTTTGAACAAGACAATAGTTTCTAGCTATAACCGAGCCGATACCGAAGATTCCAGCAATGGAATATCTCGACGTGAAAATGTTCTCGATTCAGCTTCTCGTGTTCCCTTTAGATATCTCCGTAATGAAACTGAAGGTTCTGTCTACTGCAATGATTCTGCTAAGATGCTTGAGATCTCTCTACATGAAAGTGTCCTCAACTCTGCATCACAAGTTATCTTTGAAGAGAATTTTATGCACTGGATCGTGGACAAAATTCCTGATCAGCACCTTTTGAACACTGCAGCATGGAAATGGATTATTCCTCTACTCTACAGGCAGTATCCCGATGACGATATTGTCCTGAATATCTCCGCCTCCTCTCCACCTTCCTTGAGACTGCGAGACCAAGATATCGCCGCCTCGATTTATGTCGACATGATAATCGAGGTTGTAAACAATGATGAAGTTATACCGGTTGCTTGCATTTCATTGGAAGTTACTGCCTCTTTTTCTCCAGTAATCTTGGAGAAGAATTTGGTTGGTCATGTAACCTTGGAAGATCTTTCATTGTCTTTGAAATGGAGCAAGATTGGTCGTATTCACCTTTATCTGATTGAGAGGACCCTTGTGGGGTTGATCAAAACCGTCGTCGTACCGTTTGTCGACCTGTATCTCTTAAAAGGAGTCCCGTTGCCAAGTTTTCATGGATTAGCCCTCGAGGACGTCGAAATGGCTTTCAATTCTTCAAGGATCATCATGTGCAGCGATGTTGCCTTGAGTGAGGGGTTTAGGCAGCTAAAAGCATCAATATGA 1551 42.94 MGSVLKFVVFSLLLASASSHINSSDEGFISMVVSQKGLNFIKDFLIDKAISSIIPLRLPNIEKTANIALIGKVHMGLSDIIIGSIEVESSDIRIGETGVNIVVTKATANMSMKWQYTYNTWLFEISDKGDASVQVDGMNIGLTLGLNQRNGTLGLSLSECGCNVKHISIHVHGGASWLYQGLVDAFEGKIESTVEDNISKKIKEGVVKLDSSLGSLPREISLAHVAVLNVTFVGSPVLSSSSIEFKIDGLFSPLNKTIVSSYNRADTEDSSNGISRRENVLDSASRVPFRYLRNETEGSVYCNDSAKMLEISLHESVLNSASQVIFEENFMHWIVDKIPDQHLLNTAAWKWIIPLLYRQYPDDDIVLNISASSPPSLRLRDQDIAASIYVDMIIEVVNNDEVIPVACISLEVTASFSPVILEKNLVGHVTLEDLSLSLKWSKIGRIHLYLIERTLVGLIKTVVVPFVDLYLLKGVPLPSFHGLALEDVEMAFNSSRIIMCSDVALSEGFRQLKASI 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8140654 8146431 + CmaCh01G011130.1 Cma01g01113 286806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01113 516 SMART bpi1_3 33 256 IPR017942 GO:0008289
Cma01g01113 516 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 239 IPR017943 GO:0008289
Cma01g01113 516 PANTHER OS06G0309200 PROTEIN 1 510 IPR045897 -
Cma01g01113 516 Pfam LBP / BPI / CETP family, N-terminal domain 37 206 IPR017942 GO:0008289
Cma01g01113 516 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 301 504 IPR017943 GO:0008289
Cma01g01113 516 SMART bpi2_2 303 501 IPR001124 GO:0008289
Cma01g01113 516 CDD BPI1 28 251 - -
Cma01g01113 516 PIRSF Lipid_binding_protein 6 292 IPR030675 GO:0005615|GO:0008289
Cma01g01113 516 PIRSF Lipid_binding_protein 286 511 IPR030675 GO:0005615|GO:0008289
Cma01g01113 516 Gene3D - 36 214 - -
Cma01g01113 516 Pfam LBP / BPI / CETP family, C-terminal domain 303 503 IPR001124 GO:0008289
Cma01g01113 516 Gene3D - 31 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01113 K05399 LBP; lipopolysaccharide-binding protein - csv:101212911 796.964
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01113 Cma09g00973 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00973 Cma-Chr9:4934171 Cma01g01113 Cma-Chr1:8140654 6.40E-140 transposed
Cma20g00567 Cma-Chr20:2731840 Cma01g01113 Cma-Chr1:8140654 1.12E-146 transposed
Cma01g01113 Cma-Chr1:8140654 Cma09g00972 Cma-Chr9:4933227 4.19E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g581 . . . . . Bpe08g01111 . . . . Cma01g01113 Cma09g00973 Car01g00982 Car09g00886 Sed04g3698 Cpe06g00786 . Bhi09g01698 Tan01g3126 Cmetu01g0909 . Hepe01g1247 Mch11g1218 . . . . . . . . . Cone9ag0049 . . Lsi02g01879 . . . . . . . . . Bma07g01283 . . Cmo01g01158 Cmo09g00972 . . . . . . . . . . . . . . . . . . . . . . Chy01g01057 Cme01g00996
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001703 1 2 1 2 2 2 4 3 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 3 6 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01113 Cma_Chr01 FPKM 7.318696 8.501272 13.260928 13.294653 3.556171 3.206786 4.426855 11.206182 11.151491 12.786604