Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01115 ATGGAGGGAATTGGATCCAGATTGGGCCGAGTCTCCTCCCGCTACGGTCCGGCCGCTACTGTCTTCAACGGCCCCGTCCGGAAGTGGAAGAAGAAGTGGGTCCTGGCTTCTTCCTCGTCCTCCGGTGTTGCTAATCAGTCCTTCTTACTCCCAATCCAATGCTCAGGAGCTTCTTCTCTGCCGCTGGACCCCGATTCCTTCGTTCCTCGGAAGCCGACGGAGCCGCCGCGCTGCCCGACGAGCCGCCCAGACGGAAGTTCCATTGCTGTGCTGGAGGAACAGAGAAATGCAGAATTGAGAAGTGTTAAAGATGAAATTAGAACAAAAGAAATGGATCAGTCTGCAGCAAAGACGGCTACTGTGAGCAATGAGGCTCAGGGAGAGCTAAATGTCAATGAGATTTTCAAGGAAGAATCTCAGGGAACCTTGAGCAATGAACACCTGGAAAAGGGCAAGATTCTAAACAGCCTGCATGATGTAGGCAAGAAAAATTTAGATTTGGCGTTGTGCTTGAACGGTCAGAACCAAGATTCTGCTGGCTCCTCCTTCATCTTCCTAGCTTTCTTCCTCCTTCAAACACTGACCAAACATGAAGCCACCAAAGTTCCAGCCATCATAGTATTCGGAGATTCCTCTGTAGATTCAGGCAACAACAACCACATCTCCACCGTTCTTAAGAGCAATTTTCCTCCTTATGGCCGTGATTTCGACGGCGGAAAGCCCACCGGAAGATTCTCCAACGGCAAGATCATTACAGACTTCATCTCTCAAGCTTTTGGAATCAAAACCACCATCCCAGCCTACTTGGATCCAAGCTTTAATATCACTGATTTTGTCCACGGGGGCAACGCCACCATAGCTAAATCTCTCTATCTCATCAGCTTAGGCACCAATGACTTCCTCGAAAACTACTTCCTTCTTCCTCAGCGGTCGTCCAAGTTTTCCGTGGAAGAGTACCAGAGTTTTTTAGTGCGAGTGGCTGCGGAGTTTGTGCGGAAGTTATACAAGCTCGGGGCGAGGAAGATGTCGATCGGGGGTCTCCCGCCGATGGGATGCCTTCCATTGGAGAGGACCTCTAGCGTGGTTTTTGGAGGTGGTGGTGAGTGTGTTGAGAAGTACAATGGAATTGCAAAGGATTTCAATGGGAAGTTGATGGGGTTGGTGGAGATGTTGGAGAAAGAATTGGGTGGGATTCGGATTGTGCTTTCGAATCCCTTCGATGTTCTTCATGATATGATTGATCATCCTAGCTACTTTGGGTTTAGCAACTCAGCAAAAGCATGCTGTGGAACAGGCAGGTTTGAGATGGGATTCATGTGCTCAAGATTGAGTCCATTTACATGTGATGATGCCAACAAGTACGTGTTTTGGGATGCCTTTCATCCCACACAAAAGGCTCATTCCATTATGGCAAATCATATTGTTAAAACTTATCTATCAATCTTTCTTTGA 1452 48.0 MEGIGSRLGRVSSRYGPAATVFNGPVRKWKKKWVLASSSSSGVANQSFLLPIQCSGASSLPLDPDSFVPRKPTEPPRCPTSRPDGSSIAVLEEQRNAELRSVKDEIRTKEMDQSAAKTATVSNEAQGELNVNEIFKEESQGTLSNEHLEKGKILNSLHDVGKKNLDLALCLNGQNQDSAGSSFIFLAFFLLQTLTKHEATKVPAIIVFGDSSVDSGNNNHISTVLKSNFPPYGRDFDGGKPTGRFSNGKIITDFISQAFGIKTTIPAYLDPSFNITDFVHGGNATIAKSLYLISLGTNDFLENYFLLPQRSSKFSVEEYQSFLVRVAAEFVRKLYKLGARKMSIGGLPPMGCLPLERTSSVVFGGGGECVEKYNGIAKDFNGKLMGLVEMLEKELGGIRIVLSNPFDVLHDMIDHPSYFGFSNSAKACCGTGRFEMGFMCSRLSPFTCDDANKYVFWDAFHPTQKAHSIMANHIVKTYLSIFL 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8157018 8163501 + CmaCh01G011150.1 Cma01g01115 286808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01115 483 MobiDBLite consensus disorder prediction 63 86 - -
Cma01g01115 483 PANTHER GDSL ESTERASE/LIPASE EXL3 184 281 - -
Cma01g01115 483 PANTHER GDSL ESTERASE/LIPASE EXL3 283 479 - -
Cma01g01115 483 Gene3D SGNH hydrolase 192 480 IPR036514 -
Cma01g01115 483 CDD SGNH_plant_lipase_like 203 474 IPR035669 -
Cma01g01115 483 PANTHER ANTER-SPECIFIC PROLINE-RICH PROTEIN APG-LIKE 184 281 - -
Cma01g01115 483 PANTHER ANTER-SPECIFIC PROLINE-RICH PROTEIN APG-LIKE 283 479 - -
Cma01g01115 483 Pfam GDSL-like Lipase/Acylhydrolase 205 474 IPR001087 GO:0016788
Cma01g01115 483 SUPERFAMILY SGNH hydrolase 204 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01115 - - - csv:101207130 449.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01115 Cma-Chr1:8157018 Cma11g01940 Cma-Chr11:12758318 1.69E-117 dispersed
Cma18g00581 Cma-Chr18:3915195 Cma01g01115 Cma-Chr1:8157018 2.27E-18 dispersed
Cma01g01115 Cma-Chr1:8157018 Cma09g00970 Cma-Chr9:4915018 5.13E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g568 . . . . . . Bma10g00574 . . . Cma01g01115 . Car01g00985 . . . Cpe02g00788 Bhi09g01691 Tan01g3119 . . Hepe01g1251 Mch11g1212 . . . . . . . . . . Cone14ag1177 Cone15ag1190 Lsi02g01883 . . . Blo07g00885 . Bda05g00700 . . . . . . Cmo01g01161 . . . . . . . . . . . . . . Cla09g01031 Cam09g1086 Cec09g1085 Cco09g1106 . . Cre09g1051 . . Chy01g01052 Cme01g01002
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000811 2 3 2 3 2 3 3 3 3 3 2 3 4 3 3 4 3 6 3 3 3 3 3 3 3 4 3 3 3 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01115 Cma_Chr01 FPKM 1.702479 1.491437 2.734789 2.82459 1.603008 2.0429 1.5443 2.733449 2.365954 2.263465