Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01116 ATGGGCGACACCAGCAGAGAGGCGTTGATTAGCAGAAAGGCGAAGGTGTTCAATCGCTCAGCCTCTCACGCTCAGGACGAATTGCATAGCTTCAGATCGTATTTACGATGGATGTGCGTGGATCAATCGGACATTTGGAGCGCTGGATTGTCGTGGTCGGTGTTCTTCCTCTTCGCTATCGTCGTTCCAGCGACGTCGCATTTCCATCTCGCCTGTTCTTCCTGTGATAGCCATCACGCGAGGCCGTTCGATCGCGTTGTTCAATTGTCGCTCAGCAGTGTGGCGACGGTTTCCTTCCTCTGCCTTTCGAATTTCATCAGGAGGTACGGACTTCGGAGATTCTTGTTCTTCGATAGGCTCTGCGATGAAAGCGAAACTGTGAGAAGAGGATACACCAACAAGTTCAATAGATCACTGAGAGTACTATCAGCATTCGTGGTCCCATGCTTCGCAGCGGAGAGCGCGTACAAAATCTGGTGGTACGCGTCAGGCGCGTCGCAAATACCATTCCTAGGGAACGTTATAGTGAGCGACGCAGTAGCGTGCTCCATGGAGCTGCTGTCGTGGCTGTACAGAACCACAGTGATCTTCCTAGTGTGCATCCTCTTCCGTCTGATCTGCGACCTCCAGATCCTACGGCTGCAGGACTTCGCCACCGTATTCCAAGTGGACTCCGACGTGGGGTCGGTCCTGTCCGAGCATTTGAGAATCAGACGGCACTTGAGAATCATCAGCCACCGGTACCGCGCCTTCATATTGTGGTCGTTGATCCTTGTCACCGGCAGTCAGTTCACTTCTCTACTCATGACTACCAAGTCCTCCTCCCTCAACATCTACATCGCCGGCGAACTTGCGCTGTGCTCGATGACGCTACTGACAAGTCTGATGATACTACTACGGAGCGCCACAAAAATCACCCACAAAGCGCAGTCAGTGACGGCGCTTGCTGCCAAGTGGCACGTATGTGCGACGTTGGATTCTTTCGACGTGACAGACGGGGAGACCCCCATGGCTGCCGCCGCTCCCGCCGACGGAAACCTTATGTTTCCGGTGACACCGCGCGGAGATGAGGAATCAGATGGGGAGGAGGGTTGTGACGAAGAAGATGAACTGGACAACACCAAGTTGATCCCAGCCTACGCTTACAGCACCATCTCGTTCCAAAAGAGACAGGCCTTAGTGACGTACTTCGAGAACAACAGAGCTGGGATAACCATATACGGGTTTACCCTGGATAGGACTACACTCCACACCATCTTTGGAATAGAGTTATCCTTGGTTCTTTGGCTGCTTGGCAAAACCATCGGTTTTTCTTAA 1317 52.77 MGDTSREALISRKAKVFNRSASHAQDELHSFRSYLRWMCVDQSDIWSAGLSWSVFFLFAIVVPATSHFHLACSSCDSHHARPFDRVVQLSLSSVATVSFLCLSNFIRRYGLRRFLFFDRLCDESETVRRGYTNKFNRSLRVLSAFVVPCFAAESAYKIWWYASGASQIPFLGNVIVSDAVACSMELLSWLYRTTVIFLVCILFRLICDLQILRLQDFATVFQVDSDVGSVLSEHLRIRRHLRIISHRYRAFILWSLILVTGSQFTSLLMTTKSSSLNIYIAGELALCSMTLLTSLMILLRSATKITHKAQSVTALAAKWHVCATLDSFDVTDGETPMAAAAPADGNLMFPVTPRGDEESDGEEGCDEEDELDNTKLIPAYAYSTISFQKRQALVTYFENNRAGITIYGFTLDRTTLHTIFGIELSLVLWLLGKTIGFS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8165005 8167534 - CmaCh01G011160.1 Cma01g01116 286809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01116 438 Pfam Protein of unknown function (DUF3537) 26 422 IPR021924 -
Cma01g01116 438 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 5 438 IPR021924 -
Cma01g01116 438 PANTHER EXTRACELLULAR LIGAND-GATED ION CHANNEL PROTEIN (DUF3537) 5 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01116 - - - csv:101212672 733.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01116 Cma-Chr1:8165005 Cma13g00411 Cma-Chr13:4670148 1.90E-147 dispersed
Cma01g01116 Cma-Chr1:8165005 Cma18g00586 Cma-Chr18:4120728 9.46E-149 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g565 Blo03g00544 . Bda07g00377 . . . . . . . Cma01g01116 . Car01g00986 . Sed01g2008 . Cpe02g00787 Bhi09g01690 Tan01g3117 Cmetu12g0552 . Hepe01g1252 Mch11g1210 . . . . . . . . Cone6ag0045 Cone9ag0054 . . . Csa07g01027 . . . . . . . . . Bma14g00325 . Cmo01g01162 . . . . . . . . . . . . . . Cla09g01029 Cam09g1084 Cec09g1083 Cco09g1104 . . Cre09g1049 . . Chy01g01051 Cme01g01003
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001990 3 2 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 1 2 3 3 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01116 Cma_Chr01 FPKM 50.712009 54.245529 7.780222 7.069195 1.064715 1.471903 1.140515 4.197482 5.121605 4.31918