Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01117 ATGTCGAATCTCCCTCAATCACTCTCCATGAGTGCTGCGTTTGGAGGTCCTGGTCCTGGTCCTGGTCCGTCCATCCCCAGTGCCTCTGGAGCTCCACCGAACAAGGAGCGTAAAATGGCTTCTTCGGAGCAGTTGGTGCTCGACCTCAGCAATCCGGATCTCCGTGAGAACGCTCTACTTGAACTTTCGAAGAAGAGGGAGCTGTTTCAAGATTTGGCCCCATTGTTGTGGAACTCTTTTGGAACCATTGCTGCCTTATTGCAAGAGATTGTATCAATATATCCTGTTCTTTCACCCCCAAATCTAACCCCTGCACAGTCAAATAGAGTTTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCCTCTCACTCAGATACAAGGATGTTGTTTCTCAATGCTCACATACCGTTGTATTTGTATCCTTTCCTTAACACAACAAGCAAGTCAAGGCCTTTTGAGTACTTGCGCCTTACTAGCTTGGGTGTCATCGGTGCGTTGGTGAAGGTTGCAACATTTATTGTGCAGAAAATTTTGCTGGATGATGTGGGGTTGGATTATATTTGTACTACAGCTGAGCGATTTTTTGCTGTTGGTCGAGTTCTGGGGAACATGGTAGCAGCTCTTTCTGAACAACCTTCCTCTCGTCTGTTGAAGCACATAATACGATGTTATCTTCGATTGTCCGATAACCCAAAAGCTTGCGATGCCTTAAGGAGCTGTCTTCCAGATATGTTGAGAGATGCTACTTTCAATGGCTGCCTCCGGGATGATGCGACCACTAGGAGGTGGCTGCAACAGTTGCTACACAATGTAGGAATGAGTAGAGTTCCAGCACTTCAGGCAGGGGCTGGATTTGACCACATGATGGAAATGGGAGAAATGATTGGAATCTTGGAGATGAGGAGGGTTCCCAATGTACCTGGTGGTGGTGCAGCTTCTGCTTTGGTGAAGATTGGAATTATTGGTGGGATTGGGTTATATGCAGCTGCCAACAGTCTCTACAATGTTGAGGGAGGGCATCGGGCTATTGTGTTTAATCGTGTAGTTGGAGTGAAAGATAAGGTTTATCCCGAAGGAACGCATCTGATGATTCCTTGGTTTGAGAGGCCAATCATATACGATGTCCGTGCTCGACCCCATTTAGTGGAGAGTACTTCTGGAAGCCGAGACCTGCAAATGGTTAGGATTGGTCTCCGAGTTCTTACCCGTCCATTGCCGAATGAATTACCTACAATGTATAGAACACTTGGTGAAAATTATAACGACAGAGTTCTGCCTTCAATCATTCAAGAAACTCTGAAATCTGTAGTCGCCCAGTATAATGCCAGCCAACTTATCACGCAAAGAGAGGTTAGGATTGGTCTCCGAGTTCTTACCCGTCCATTGCCGAATGAATTACCTACAATGTATAGAACACTTGGTGAAAATTATAACGACAGAGTTCTGCCTTCAATCATTCAAGAAACTCTGAAATCTGTAGTCGCCCAGTATAATGCCAGCCAACTTATCACGCAAAGAGAGGCTGTAAGTAGAGAAATCCGAAAGACTTTAACTGAGAGAGCAGCCAATTTCAACATTGCTCTTGATGATGTGTCCATAACAAGTTTAACTTTCGGAAAGGAGTTTACAGCTGCCATTGAAGCCAAACAAGTGGCTGCCCAAGAAGCCGAAAGAGCTAAATTCGTCGTCGAAAAGGCTGAACAGGACAAGAAAAGTGCCGTCATTAGAGCCCAGGGAGAAGCCAAGAGTGGGCAGCTGATAGGGCAAGCTGTTGCCAATAACCCGGCGTTCATGACTCTGAGGAAGATCGAAGCAGCAAGAGAAATCGCACACACAATTGCGCACTCATCCAACAGGGTATACCTGAATTCGGATGATCTGTTGCTGAACCTTCAAGACATGAAATTGGAGCCAAGTGGAAAGAACATTTACTTACATCAGTGGAATGGTGTACGTAAAGCAGTCGATATGTTGAGTATTAAGCGCGTTCCTACCGTGGTATCTAATTACCAAAAGGACGAGGCCGAGGAAGTCTCTCGCAGAGGTGGGTGCGGCCGGAACTGTCTCAATAAGTGTTGCATTGAAGGAGCCAAGATTCCATTGTATGCTTTCAAGGAGCTTAACAAGATAGCTTGTTCGAAAGGCTTGTGCTGCCAATATGAGAACAGTGTTCCTCCTGTTGCTTTTCTTGACTCGCTGCTTCTTGGGGAGTGGGAGGATCGGATGCAGCATGGGCTATTTCGCTATGATGTCACTGCTTGCGAAACGAAGGTGATTCCTGGGAAGTATGGTTTCATTGCTCAGTTGAACGAGGGGCGCCATCTGAAGAAGAGGCCGACTGAGTTTCGAGTTGATAAGGTTCTCCAGCCCTTTGATGGTAGCAAATTCAACTTCACGAAGGTTGGGCAAGAAGAGGTCCTGTTTCGGTTTGAACCAAATGAAAATGGTGGTGATACAGAGTTTATTCCAAATGCCCCGGTCGATGTTGAAAATTCTCCAAGCGTGGTTGCCATTAATGTCAGTCCTATTGAATATGGACATGTTCTTTTGATCCCTCGTGTTCTTGAGTGTTTCCCACAAAGGATCGATCCAGAAAGCTTCTTGCTTGCTCTTCACATGGCAGCGGAGGCGGGGAATGCGTACTTTCGACTCGGATATAACAGCTTGGGCGCATTTGCCACCATCAATCACCTTCACTTTCAGGCATATTACTTGGCTGTCCCTTTCCCGATTGAGAAGGCGCCGATGAAGAAAATTATCACGTTGAAAGATGGAGTGTTGGTCTCTGAACTGCTTAAATATCCGGTTAGAGGGCTTGTGTTTGAGGGCGGAAATTCTTTGCAAGCTCTATCGAACTCGGTTTCTGATGCCTGCATATACCTTCAAGAAAACAACATTCCATTCAATGTCTTAATTGCTGATTGTGGGCAACGGATCTTTCTTCTTCCACAGTGTTATGCCGAGAAACAAGCACTTGGGGAAGTGAGCTCAGAGCTCCTCGAAACCCAAGTGAACCCAGCTGTTTGGGAGATAAGCGGTCACATGGTATTGAAGAGGAAGGAGGATTATGAGGAGGCATCGGAGGAAAATGCATGGAGGCTCCTCGCGGAGGTATCCCTCTCAGAAGAGAGGTTTCAAGAAGTGTGTGCGCTCATATTTGAAGTCATCAATACAGGCGATGCTGAAAATGCTGAAGGTAGCCCGAGTTGCCCAAAGGAGGAAAGTGATGCTTGTGTCAAGAAGGTGGAAGCCAAAAACGCCTCCCCTCGACTCCCGGTGACCGGTACGCAGGAATGCTTAGTTTAG 3306 46.49 MSNLPQSLSMSAAFGGPGPGPGPSIPSASGAPPNKERKMASSEQLVLDLSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHSDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALSEQPSSRLLKHIIRCYLRLSDNPKACDALRSCLPDMLRDATFNGCLRDDATTRRWLQQLLHNVGMSRVPALQAGAGFDHMMEMGEMIGILEMRRVPNVPGGGAASALVKIGIIGGIGLYAAANSLYNVEGGHRAIVFNRVVGVKDKVYPEGTHLMIPWFERPIIYDVRARPHLVESTSGSRDLQMVRIGLRVLTRPLPNELPTMYRTLGENYNDRVLPSIIQETLKSVVAQYNASQLITQREVRIGLRVLTRPLPNELPTMYRTLGENYNDRVLPSIIQETLKSVVAQYNASQLITQREAVSREIRKTLTERAANFNIALDDVSITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAVIRAQGEAKSGQLIGQAVANNPAFMTLRKIEAAREIAHTIAHSSNRVYLNSDDLLLNLQDMKLEPSGKNIYLHQWNGVRKAVDMLSIKRVPTVVSNYQKDEAEEVSRRGGCGRNCLNKCCIEGAKIPLYAFKELNKIACSKGLCCQYENSVPPVAFLDSLLLGEWEDRMQHGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGSKFNFTKVGQEEVLFRFEPNENGGDTEFIPNAPVDVENSPSVVAINVSPIEYGHVLLIPRVLECFPQRIDPESFLLALHMAAEAGNAYFRLGYNSLGAFATINHLHFQAYYLAVPFPIEKAPMKKIITLKDGVLVSELLKYPVRGLVFEGGNSLQALSNSVSDACIYLQENNIPFNVLIADCGQRIFLLPQCYAEKQALGEVSSELLETQVNPAVWEISGHMVLKRKEDYEEASEENAWRLLAEVSLSEERFQEVCALIFEVINTGDAENAEGSPSCPKEESDACVKKVEAKNASPRLPVTGTQECLV 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8174311 8193527 - CmaCh01G011170.1 Cma01g01117 286810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01117 1101 SUPERFAMILY Band 7/SPFH domain 364 450 IPR036013 -
Cma01g01117 1101 PANTHER GDP-L-GALACTOSE PHOSPHORYLASE 2 621 1066 - -
Cma01g01117 1101 MobiDBLite consensus disorder prediction 1 43 - -
Cma01g01117 1101 PANTHER GDP-D-GLUCOSE PHOSPHORYLASE 1 621 1066 IPR026506 GO:0080048
Cma01g01117 1101 SMART PHB_4 332 550 IPR001107 -
Cma01g01117 1101 Coils Coil 549 569 - -
Cma01g01117 1101 CDD SPFH_like 451 540 - -
Cma01g01117 1101 SUPERFAMILY Band 7/SPFH domain 469 557 IPR036013 -
Cma01g01117 1101 Gene3D - 34 168 IPR011989 -
Cma01g01117 1101 Gene3D - 169 275 IPR011989 -
Cma01g01117 1101 PRINTS Prohibitin signature 376 392 IPR000163 GO:0016020
Cma01g01117 1101 PRINTS Prohibitin signature 440 456 IPR000163 GO:0016020
Cma01g01117 1101 PRINTS Prohibitin signature 394 413 IPR000163 GO:0016020
Cma01g01117 1101 PRINTS Prohibitin signature 417 435 IPR000163 GO:0016020
Cma01g01117 1101 Pfam Cell differentiation family, Rcd1-like 169 271 - -
Cma01g01117 1101 Pfam Cell differentiation family, Rcd1-like 45 168 - -
Cma01g01117 1101 Gene3D Band 7 domain 464 552 IPR036013 -
Cma01g01117 1101 CDD SPFH_prohibitin 333 583 IPR000163 GO:0016020
Cma01g01117 1101 Pfam SPFH domain / Band 7 family 452 567 IPR001107 -
Cma01g01117 1101 Pfam SPFH domain / Band 7 family 335 450 IPR001107 -
Cma01g01117 1101 SUPERFAMILY HIT-like 829 903 IPR036265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01117 K14190 VTC2_5; GDP-L-galactose phosphorylase [EC:2.7.7.69] - csv:101205337 789.645
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01117 Cma09g00966 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00965 Cma-Chr9:4893509 Cma01g01117 Cma-Chr1:8174311 1.19E-144 transposed
Cma09g00966 Cma-Chr9:4899923 Cma01g01117 Cma-Chr1:8174311 0 transposed
Cma16g00838 Cma-Chr16:4789931 Cma01g01117 Cma-Chr1:8174311 2.79E-71 transposed
Cma01g01117 Cma-Chr1:8174311 Cma19g00910 Cma-Chr19:8228524 3.94E-85 wgd
Cma01g01117 Cma-Chr1:8174311 Cma09g00964 Cma-Chr9:4884643 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g556 Blo03g00546 Blo03g01457 Bda07g00375 Bda09g00406 . Bpe08g01115 . . . . Cma01g01117 Cma09g00966 Car01g00988 Car09g00881 Sed01g1878 Cpe06g00781 Cpe02g00786 Bhi09g01684 Tan01g3114 Cmetu01g0669 . Hepe01g1255 Mch11g1207 . . . . . . . . Cone6ag0049 Cone9ag0059 Cone14ag1166 Cone15ag1179 Lsi02g01888 Csa07g01113 . . . . . . . . . Bma14g00326 . Cmo01g01163 Cmo09g00968 . . . . . . . . . . . . . Cla09g01026 Cam09g1081 Cec09g1080 Cco09g1101 . . Cre09g1046 . . . Cme01g01006
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004472 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34315 PF01145 Band_7 9.10E-13 CL0433 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01117 Cma_Chr01 FPKM 68.462357 73.224396 36.861195 38.25013 69.088394 65.476479 69.591202 90.109459 91.456039 92.404015