Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g01118 | ATGGAGTTCAGACCTCGAGATTACAGTGCTGAAGCAAAGCTGTTTTTGCTGCATCGTGATCGCGCAGAAACAGATCCTCTTTCTGTTCCATCGTCCCAGCAGGCCAACATTGCTGATGATCAAATTGTCAAATATGATGATCCACTTAGAGCGTCAGATGACGATGCAACTGTTTCAGGCGTCTATTTGGAAGATACAGAAAATTCTTCTGCCATAGGAGTTCCTTCTGAATCTGCATTTCCACCTGCAGAAAGGGATTGGTCCTCGTTCACGAGATTCATGATGCAGAGATTTTCTGTCTCTAAATTGGTCTCAGTTACTTCAGTGTCCAATGCAATATTAAAAGTTGGGAAAAGTATGGCACCTACTTTTGTTATTTTACTTTTAGCACCTTTCACTTCATTGGTCACAGCATATGAGAGATCTTCAACTGACAAGCATTTGGAGGAACTTGAAGATCCTCAGAACATTACAGAAAACGAAGTCAAGGTTGTTACACGCCAAGATTATATTAACCGCTTGCGTGAGTTCAAGGATGACTTGGTTCGTGCTTGGAATGCAAGTGATCGCGTGACATCTTTGAAGATATCTGTGAAGGTTGCCAAGCTTCTGAAGGATACGTCTGTTTTGCAATTTTATCCCACACTTTTTGTTCTAGTCACGGAAATTTTGGATATGCTTGGAAATTTTGTGTGGGATCGCATCAGGAGTAAAACTGAGTTCACTGAAGATGGGGCCAGATTTTGCTCCTTGCCAGAACACTTCAAAATAAAGGACATTTGCCAAAACGCAAAGGAAACATGTTATAACTGGTTTTGCAAAGTTGGTGCCATTCAAGAACTTCTTCCGCGCATTTATTTGGAGTTGGCCTTATTGCCTTGTTGGCAATTCTTGGATGATCAACCTGTTGTCGTCATACAGCGCTTGGTGATGATGGCTAGAGGAATAGCTGATCCTTTGGCATCTGCTTATTGTCGTTTGTACTTGACTCATTGTGCACAGAAGTTTCCCTCGTGTGATATAGGATTGCTAGTGTCATGTGTCAATGACACGAATGCTCAATTGAAACATTTCATACCAGCAAAAGAAACCAAAACTGGCAGTTCTACGGATAGCAAAGTCTTGCTTGTTGGTGTGATAGAGCCTACAATCGAATATATTGTAAAATGCATATTTAAGAATGTCTCTCAGAGACAACTAGATGGAACACTTGTAGCGCTTGGACTGGGAAGAAATATGGAGAATTCACAGTGTGTCTCAATCGTTCTTCATTACATACTAAAGGAACTTCCAGTTGAAGTATTAAGCTCGAAGGCTATGGAGTTTCTCCACCTTATTGATCGCAGCAACGATTCATCCTTCCGTCAGTTCTTGAATTACAGGTTACATGGGCTCAGGCTTTGTGAAAGGAGACCTCCTGTGGATATTGTAGATGCCGTAATGCATAATGTACTTGAGGTTATTGCGCAAAATGAGAGCCTCGACGAGTATCTGACAGTCATTGATGCCTATTTGGATATTGTACTTCAAAATCATTTGGATAGCTGTGTAAAAACGATTTTAGATGCGATTTCACAGAGAACATGCAATAGAGGGATAGACGAGAATGGACTCCTCAGTTTGCAGTCAATTATGGGGAAGCTTCTTTCTCATTACCAGCATTTGGAAGATGTATTTGCACTAAGCCATTTTCTGGAGATTTTGGACTTGCTTGTCGGGAGACCAAAAGGCATTATCATTATTAGTATTCTTAAAATGGCTACTAGGAGCTCCTATATACGTGATCCAGCAACCGTAGAATTGCTTTTTGAAATTTCCCAGGCTCTTAATGATAGCTTTGATTTTGCCAACATGAAAGATGATGAAAATCAACCAGCACATTTGCTTTCTCGTTTTGTCCAACTGGTGGACTTTGGGAAAGAGAGGGAGCGCCATCTAGCATTCCTTGTTGAGTGTCGTGGAGCATTTGGTACCATAGATGAGGTTAAGGACACTCTCGTGCATTCTAGCAATGGTTTAGCAGTAAAGGCTTTAAAAGATGCGAAGAAGCATGGCAATTTTGTCAAATCCTGCATAGCGTTTTCTGAAGTCACATTACCGTCAATATCAACTCATATTAAGCAGTTCAATCTTTACCTTGAGACTGCGGAGGTTGCTTTGTTAGGTGGTTTAATTTCTCATTCGGGTGAATTAATAGATTCAGCAATCAGCTGTTTGCACAATGTGGACATGAAGGAAGGATCCCGCGCAGCAGCCGACGCTGATCTTTTACTATCCTCAATTCAAAAGTTATGCAGCCTCTTGGTTATGCTTCCTGCTTCCGATTTCAAATTCGGTTCAATAGGAATCTTAGCTACCTTGCACACAAGCAAACATGTTTCTCCAAGTAATCCTGATCATGGAAGTGCATACTTCCCGAAGATTTTAGTATCATTTGTAAATGATATACCATGGATGACACCTAAAATGAGGACAAGGATTTTATGTGCTATACTTTCACTGTTGGCTACATGTTCCCAAAATAGACTCCCTTATCATGCAGATAATGGACTGTTTTGGGGTTCGAACAATGTCTTCTTTGGCGACTTGGCCTACTTGCATGAACTTGTCTCTTTGTCTGAGCTTATTGTAGAGAATCTAGTTAATGCTATTGAGCAAGAGTCTTCTGGGGCCGCACGTGGAATACTGGCGCTCGAAGTTTGTGATTCCTTCCTGTCGTCTTTTACTCTAAAAGACGAAACGTATGCAATTTGCTCCAAGCTGATGGAGACTGCTAAACTGTGTATGAGTGACAGCAACAAATATTTGCAGTCAACCTTCCAACGCCTAGAGGAAAAGTCACAATCACGCGGCGTTGCGATGGATTATATAAATTCACAAATCTCTTCTTCCTCTTCTCCACAATTTCATCTCTCCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCAGCCATGGACTGGACCAGAGGCCCCGCCGTCGGCCGCGGTTCGTCCGCCACCGTCTATTTGGCCACCACCACCACCTCCTCTTCCTCCTCCCGCCAATTCGCCGTCAAAACCACTGACCTCTCTACATCGGAGTTGTTGCGGAAGGAACACGCTCTTCTCTCTAATTTGAACTCCCCATACCTAATCAACTGCTTTGGTTTCGATGTTGAGATTGAGAGCTCTAAGTCGCCGGTTTTCAATCTGTTTATGGAGTATTTACCGGAGGGGACGCTGTGGGATGCTATTCAGAGACACGGTGGACGGATGGAGGAATCGATGATCGGGGCGTATTCGCGCCAGATTCTCAAAGGATTGGAGTATCTTCACGCGAATGGATTGGCGCATTGTGATATCAAGAGCCGGAATCTGTTATTGAGTGGCGAGGGCTTGAAAATCGCCGATCTAGGTTGTGCGAAATTTGTGGAAGGAGGAGGAGTTTCTGGAAATGGAGTTAGGGCTTTTTCTGGTTCGCCTGCGTACATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGATTTCCGGCGGATGTTTGGGCGTTTGGATGTACGGTCATTGAAATGGCTACCGGTAATCATCCATGGACGGGGTTGGAGGATCCGGTATCAGCGTTGTATACGATTGGTTTTTCCGGCGAGGTTCCGGAGGTTCCGCGGTGGTTGTCGGAGGAAGCAAGGGATTTCATCGCTAAGTGTTCGATAAAAGACCCGAAAGAACGATGGAGTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCCGAAATTGAATGTTCGAGGAGGAAAACGACGAGTTCTTCTCCAAGCTCTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTCGGAGACTCCATTGAAGGTGAGCAATCAAGCTCCTCTGGCGGATTCTCCGGCAGAAAGGATTAGAAGCTTGGCTGGAAATTTGTCTTCCAATTGCGATTGGGAAGGGGATGATGAACGAGATTGGATCTTGATCAGGAACAACGACGTTGGCGGAGGAAGCCATGGAAATGGATCTGTGAGCTCAGATTTTCCTGAAGAAGAAGAAGAAGAAGAAGAAGAGATGGTAACATTGAACTTAGAATTTGAAGAAGATTTAGTGTTGTTCTGTTTGGTTGATGATGATTTTAGTACTACGAACATGGAATTTGAGACTGATTTCATGTTGAATACTGTGAAATTTGGAGGATCAAATGACATTTTTCTCGTGTCGAACGCCGCCACACCGGTGCTCTCTTCTTCCTGCCATTGCCAATTCAATCAAAGCTCGAAATCTCCATCGTCACTGATTTTAATGGAAGCACCGTCGTTCTCTATCGCTGTTTCTTCTTCTCGGACTGTAATTCGATCATTTCCGTCGTCGTTTCATACCAGCTCTCTCGTTTTTCTTCGCAATAATCGTTACAAAACTTGTCATCTCAAAGTTAAGTCCACCGGTAAGTTTGCGGTTCGTGCCTCATTTTCGGGTGACTCAGTCGTGACTTTGCTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAGGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCAGCCATGGATGTGCTAAACAATAAAGGAATGGCTGAAGCACTCTGTACTTATATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTTCAATTACTCTTTGAATCAAGTGACGAGAATGGACCAGTAAAAGGACTTGGCTTAATACCGGGTGTGGTTGGGCGTTTCGACTCTTCCAATTGTTTTAGTGTACCCCATATTGGGTGGAATGCTTTGGAAATCTCAGATGACTCTGAGATCTTGGACGATATTTGTAATCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCTGACAAGAACAAGGAGTGGATCTCTTCTACCTGCAGCTATGGTGACAGGTTTATAGCCTCAGTTAGAAGGGGAAATGTCCATGCAGTTCAATTCCACCCAGAAAAGAGTGGAGATGTAGGCCTGTCTGTCCTCAGAAGATTCTTGCTTCCAAAGTCAACTTTGACCAAGAAACCTACTGAGGGGAAGGCATCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGACAAATGATCAAGGGGATCTCGTTGTTACCAAAGGGGACCAATATGATGTAAGGGAGCAATCAGAAGAGAATGAGGTGAGGAACCTTGGCAAGCCGGTTGAGCTTGCTGGACAATACTACAAGGATGGAGCTGACGAGGTCAGTTTTCTGAATATAACTGGTTTCCGTGATTTCCCTCTTGGCGACTTGCCAATGTTGCAGGTTCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGAGGCGGAATTAGAGATTTTACGGATGCAAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTCAGATCTGGAGCTGATAAAATATCTATCGGAAGTGATGCAGTTTATGCTGCTGAGGAATATTTAAGAACTGGTGTAAAGACTGGAAAGAGCAGCTTGGAACAGATTTCTACTGTTTATGGAAATCAGGCTGTCGTGGTAAGTATTGATCCTCGAAGAGTGTACCTTAAAAGTCCTGATGATGTGGAGTTCAAAGTCATCCGAGTTACTAACCAAGGTCCTAATGGAGAAGAATATGCATGGTATCAGTGTACAGTTAATGGAGGTCGAGAAGGTCGACCTATTGGAGCTTATGAGCTTGCAAAAGCAGTGGAGGAGCTTGGAGCTGGAGAAATACTGCTAAATTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATTTAGATCTAGTAAAGCTGATATCTGATTCTGTGAGCATCCCTGTTATTGCCAGCAGCGGTGCTGGGTGTTCTGACCATTTCTCAGAGGTGTTTAACAAAACAAATGCATCTGCTGCCTTAGCTGCTGGCATTTTCCATCGCAAGGAGGTGGCTATTCAGTCCGTAAAAGGGCATTTATTAAAGGAAGGCATAGAGGTCAGAATTTAA | 6078 | 43.37 | MEFRPRDYSAEAKLFLLHRDRAETDPLSVPSSQQANIADDQIVKYDDPLRASDDDATVSGVYLEDTENSSAIGVPSESAFPPAERDWSSFTRFMMQRFSVSKLVSVTSVSNAILKVGKSMAPTFVILLLAPFTSLVTAYERSSTDKHLEELEDPQNITENEVKVVTRQDYINRLREFKDDLVRAWNASDRVTSLKISVKVAKLLKDTSVLQFYPTLFVLVTEILDMLGNFVWDRIRSKTEFTEDGARFCSLPEHFKIKDICQNAKETCYNWFCKVGAIQELLPRIYLELALLPCWQFLDDQPVVVIQRLVMMARGIADPLASAYCRLYLTHCAQKFPSCDIGLLVSCVNDTNAQLKHFIPAKETKTGSSTDSKVLLVGVIEPTIEYIVKCIFKNVSQRQLDGTLVALGLGRNMENSQCVSIVLHYILKELPVEVLSSKAMEFLHLIDRSNDSSFRQFLNYRLHGLRLCERRPPVDIVDAVMHNVLEVIAQNESLDEYLTVIDAYLDIVLQNHLDSCVKTILDAISQRTCNRGIDENGLLSLQSIMGKLLSHYQHLEDVFALSHFLEILDLLVGRPKGIIIISILKMATRSSYIRDPATVELLFEISQALNDSFDFANMKDDENQPAHLLSRFVQLVDFGKERERHLAFLVECRGAFGTIDEVKDTLVHSSNGLAVKALKDAKKHGNFVKSCIAFSEVTLPSISTHIKQFNLYLETAEVALLGGLISHSGELIDSAISCLHNVDMKEGSRAAADADLLLSSIQKLCSLLVMLPASDFKFGSIGILATLHTSKHVSPSNPDHGSAYFPKILVSFVNDIPWMTPKMRTRILCAILSLLATCSQNRLPYHADNGLFWGSNNVFFGDLAYLHELVSLSELIVENLVNAIEQESSGAARGILALEVCDSFLSSFTLKDETYAICSKLMETAKLCMSDSNKYLQSTFQRLEEKSQSRGVAMDYINSQISSSSSPQFHLSLSSSSSSSSSSLSAMDWTRGPAVGRGSSATVYLATTTTSSSSSRQFAVKTTDLSTSELLRKEHALLSNLNSPYLINCFGFDVEIESSKSPVFNLFMEYLPEGTLWDAIQRHGGRMEESMIGAYSRQILKGLEYLHANGLAHCDIKSRNLLLSGEGLKIADLGCAKFVEGGGVSGNGVRAFSGSPAYMAPEVARGEEQGFPADVWAFGCTVIEMATGNHPWTGLEDPVSALYTIGFSGEVPEVPRWLSEEARDFIAKCSIKDPKERWSVKRLLEHPFLQGFDSESEIECSRRKTTSSSPSSVLDQSFWDSMEDSETPLKVSNQAPLADSPAERIRSLAGNLSSNCDWEGDDERDWILIRNNDVGGGSHGNGSVSSDFPEEEEEEEEEMVTLNLEFEEDLVLFCLVDDDFSTTNMEFETDFMLNTVKFGGSNDIFLVSNAATPVLSSSCHCQFNQSSKSPSSLILMEAPSFSIAVSSSRTVIRSFPSSFHTSSLVFLRNNRYKTCHLKVKSTGKFAVRASFSGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNNKGMAEALCTYIENDRPFLGICLGLQLLFESSDENGPVKGLGLIPGVVGRFDSSNCFSVPHIGWNALEISDDSEILDDICNRHVYFVHSYRAMPSDKNKEWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLLPKSTLTKKPTEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQSEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISTVYGNQAVVVSIDPRRVYLKSPDDVEFKVIRVTNQGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDLDLVKLISDSVSIPVIASSGAGCSDHFSEVFNKTNASAALAAGIFHRKEVAIQSVKGHLLKEGIEVRI | 2025 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 8194586 | 8230140 | + | CmaCh01G011180.1 | Cma01g01118 | 286811 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g01118 | 2025 | ProSiteProfiles | Glutamine amidotransferase type 1 domain profile. | 1496 | 1704 | - | - | |
| Cma01g01118 | 2025 | Pfam | Protein kinase domain | 993 | 1249 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma01g01118 | 2025 | CDD | GATase1_IGP_Synthase | 1497 | 1695 | IPR010139 | GO:0000105|GO:0016763 | |
| Cma01g01118 | 2025 | Gene3D | Aldolase class I | 1717 | 2025 | IPR013785 | - | |
| Cma01g01118 | 2025 | Pfam | Glutamine amidotransferase class-I | 1499 | 1694 | IPR017926 | - | |
| Cma01g01118 | 2025 | SUPERFAMILY | Class I glutamine amidotransferase-like | 1496 | 1695 | IPR029062 | - | |
| Cma01g01118 | 2025 | PANTHER | ESOPHAGEAL CANCER ASSOCIATED PROTEIN | 1 | 774 | IPR029705 | GO:0032456 | |
| Cma01g01118 | 2025 | PANTHER | ESOPHAGEAL CANCER ASSOCIATED PROTEIN | 793 | 949 | IPR029705 | GO:0032456 | |
| Cma01g01118 | 2025 | ProSiteProfiles | Protein kinase domain profile. | 989 | 1249 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma01g01118 | 2025 | Hamap | Imidazole glycerol phosphate synthase subunit HisH [hisH]. | 1496 | 1697 | IPR010139 | GO:0000105|GO:0016763 | |
| Cma01g01118 | 2025 | ProSitePatterns | Protein kinases ATP-binding region signature. | 995 | 1021 | IPR017441 | GO:0005524 | |
| Cma01g01118 | 2025 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1111 | 1123 | IPR008271 | GO:0004672|GO:0006468 | |
| Cma01g01118 | 2025 | SUPERFAMILY | Protein kinase-like (PK-like) | 989 | 1297 | IPR011009 | - | |
| Cma01g01118 | 2025 | TIGRFAM | IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | 1497 | 1695 | IPR010139 | GO:0000105|GO:0016763 | |
| Cma01g01118 | 2025 | CDD | HisF | 1715 | 2019 | IPR004651 | GO:0000105|GO:0000107 | |
| Cma01g01118 | 2025 | SUPERFAMILY | Ribulose-phoshate binding barrel | 1712 | 2024 | IPR011060 | - | |
| Cma01g01118 | 2025 | Pfam | Histidine biosynthesis protein | 1716 | 2007 | IPR006062 | GO:0000105 | |
| Cma01g01118 | 2025 | CDD | STKc_MAPKKK | 988 | 1249 | - | - | |
| Cma01g01118 | 2025 | TIGRFAM | hisF: imidazoleglycerol phosphate synthase, cyclase subunit | 1713 | 2024 | IPR004651 | GO:0000105|GO:0000107 | |
| Cma01g01118 | 2025 | SMART | serkin_6 | 989 | 1249 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma01g01118 | 2025 | Gene3D | Transferase(Phosphotransferase) domain 1 | 986 | 1304 | - | - | |
| Cma01g01118 | 2025 | Gene3D | - | 1493 | 1716 | IPR029062 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g01118 | K01663 | HIS7; imidazole glycerol-phosphate synthase [EC:4.3.2.10] | K25731 | csv:101204283 | 1454.88 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01118 | Cma-Chr1:8194586 | Cma09g00962 | Cma-Chr9:4863606 | 0 | dispersed | |
| Cma01g01118 | Cma-Chr1:8194586 | Cma19g00913 | Cma-Chr19:8240449 | 2.98E-90 | wgd | |
| Cma01g01118 | Cma-Chr1:8194586 | Cma02g00175 | Cma-Chr2:804772 | 2.46E-94 | wgd | |
| Cma01g01118 | Cma-Chr1:8194586 | Cma20g00605 | Cma-Chr20:2831848 | 1.15E-93 | wgd | |
| Cma01g01118 | Cma-Chr1:8194586 | Cma03g00547 | Cma-Chr3:5098993 | 1.12E-81 | wgd | |
| Cma01g01118 | Cma-Chr1:8194586 | Cma07g00322 | Cma-Chr7:1405439 | 1.42E-89 | wgd | |
| Cma01g01118 | Cma-Chr1:8194586 | Cma09g00961 | Cma-Chr9:4848688 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi19g544 | Blo03g00550 | . | Bda07g00371 | . | . | . | . | . | . | . | Cma01g01118 | . | Car01g00991 | . | . | . | Cpe02g00783 | Bhi09g01665 | . | . | . | . | Mch11g1203 | . | . | . | . | . | . | . | . | . | Cone9ag0063 | . | . | Lsi02g01892 | Csa07g01109 | . | . | . | . | . | . | Bpe11g00556 | . | . | Bma14g00330 | . | Cmo01g01166 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla09g01021 | Cam09g1077 | Cec09g1077 | Cco09g1098 | . | . | Cre09g1043 | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003267 | 1 | 12 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 2 | 5 | 1 | 48 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 68275 | PF03635 | Vps35 | 2.00E-08 | No_clan | Cma | PK |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cma01g01118 | Cma_Chr01 | FPKM | 7.121464 | 7.606075 | 6.046431 | 6.319889 | 7.066932 | 7.381923 | 7.605202 | 7.271764 | 7.186347 | 6.806187 |