Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01123 ATGGAGAAACTGAAGAAGTCGGTGATCGAAATCGCCTACAGCAGGGACCACGCTAAGCTCTCTTCTCTGCAACGTTCCCTCATCCCCTTTCTCTACATGGCGTCTTCTCTCTACAAGCTCGGTCTGTCCCTTCGTCACCATTTCTACCTCTACGGCATATGTTCCAAGCATCGATCAATTCCTGGTCTAGATGTTGTTTTATGGTCGGCTTTTAGCCGCATTGAAAGGTTGCCAGTGCCAGTTATTAGTGTTGGGAATTTGACTTGGGGAGGCAATGGGAAAACACCAATGGTCGAGTTCATTGCCTTATGGCTTGCGAGCTCTGGGATTTCACCTCTAATTCTTAATAGGGGCTATGCTGGTGGGGATGAAGCTAAAATGCTTAGGAGGCATCTTGCTGGGAGTCTCGTTAAAGTAGGTATTGGAGCAGATAGGAGAGCAACTGCTGCTTGGTATTTTAACAAATATGGTTATGTTGGATCTCGGAGTAGCACATTGACTGAGAAGTGTTGTTTAGAACAAGCGAGAAATCTTCCGAAGTCCGAAAAAATTGGTGCTATTATTCTTGATGATGGGATGCAGCACTGGAGTTTGCACCATGACTTGGAGATTGTTATGTTCAATGGGATAACACTGTGGGGAAATGGGCAATTATTACCACTTGGACCTTTAAGAGAACCATTGGCTGCACTCGAGAAGGCAGACGTTGCCATTATTCATCATGCTAATCTGATTTCGGCACAAAGAAACGAAGATATCATTATAACGTTGCGGAAAATTAAGGATTCGCTTACTGTGGTGTTTACCGAAATGGCTCCCTCATTCTTCTTTGAAGTTACAAATATCAATTCCAGAATATCTTTGGGAACATTGTCTAACAGTGTTGTATTATGTGTTTCTGCCATTGGCTCTGCTGATGCTTTTGTGCAGACAATGCAGAAGATAGGAGCATATCATGTTGATCGACTCGACTTCACCGACCATCACATGTATCAAGACAGGGACATGGCATTGATTAAAATAAAGCTTGAGGAATTGGAGAAGACGTTGGCCTCTAAACCAGTCATTGTTGTTACAGAAAAGGATTATGATCGGGATCCAGCGATATTCGAGAACTTGCATCCATACCGTGTTTTGGCCCTTCGTTCTCAACTGAAAATCATGAACATCAAAGGTTGCAACGAGGATCGCTTCGAGGAGTTGTTGGAGAAGACGGTACGAGTGAAATTGTCTTCTGTAATGAGGTCTTCTGAGCTCGAAGTCTGCAGTTGA 1272 43.71 MEKLKKSVIEIAYSRDHAKLSSLQRSLIPFLYMASSLYKLGLSLRHHFYLYGICSKHRSIPGLDVVLWSAFSRIERLPVPVISVGNLTWGGNGKTPMVEFIALWLASSGISPLILNRGYAGGDEAKMLRRHLAGSLVKVGIGADRRATAAWYFNKYGYVGSRSSTLTEKCCLEQARNLPKSEKIGAIILDDGMQHWSLHHDLEIVMFNGITLWGNGQLLPLGPLREPLAALEKADVAIIHHANLISAQRNEDIIITLRKIKDSLTVVFTEMAPSFFFEVTNINSRISLGTLSNSVVLCVSAIGSADAFVQTMQKIGAYHVDRLDFTDHHMYQDRDMALIKIKLEELEKTLASKPVIVVTEKDYDRDPAIFENLHPYRVLALRSQLKIMNIKGCNEDRFEELLEKTVRVKLSSVMRSSELEVCS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8241918 8245973 - CmaCh01G011230.1 Cma01g01123 286816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01123 423 TIGRFAM lpxK: tetraacyldisaccharide 4'-kinase 67 363 IPR003758 GO:0005524|GO:0009029|GO:0009245
Cma01g01123 423 Hamap Tetraacyldisaccharide 4'-kinase [lpxK]. 8 407 IPR003758 GO:0005524|GO:0009029|GO:0009245
Cma01g01123 423 PANTHER TETRAACYLDISACCHARIDE 4'-KINASE 1 408 IPR003758 GO:0005524|GO:0009029|GO:0009245
Cma01g01123 423 Pfam Tetraacyldisaccharide-1-P 4'-kinase 69 405 IPR003758 GO:0005524|GO:0009029|GO:0009245
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01123 K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] - csv:101204941 636.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01123 Cma-Chr1:8241918 Cma09g00959 Cma-Chr9:4832531 9.04E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g529 . . . . . Bpe08g01118 . . . . Cma01g01123 . Car01g00996 . Sed04g3221 . Cpe02g00778 Bhi09g01657 Tan01g4565 Cmetu01g0146 . Hepe01g1264 Mch11g1198 . . . . . . . . . Cone9ag0064 . . Lsi02g01897 Csa07g01102 . . . . . . . . Bma07g01289 . . Cmo01g01174 . . . . . . . . . . . . . . Cla09g01016 Cam09g1073 Cec09g1073 Cco09g1092 . . Cre09g1038 . . . Cme01g01020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008700 0 1 1 2 1 0 1 0 0 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 6 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01123 Cma_Chr01 FPKM 2.442491 2.455822 4.362012 4.550631 6.095882 8.128437 6.757887 5.378574 5.739357 5.746372