Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01124 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGGAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTGACATCATCGGAATCTGAACCGCGACGGAGCCTCCGCAGCCGGAATGTGCGGTACAACATCGATTACGACGATTTTCTTGAAGAAGACGACGAGGATGAGGAAGAGAACGAGAGAAGAAGAGAGAAGAAGCTCAAGCTTGTTGTGAAGCTCAACCAGAGCAGAGACGGAGAGAATCTGTCGCCGGTGGCCAGACTTTCTAGGTCTGGAGCGCGTAGAGAGGACGCGGCGGAGTACGGTTCGTCGGCGTCGGAAGGGGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGAGGTGAAGAAGAGGATGAAGATGAAGATGGAGACGAAAATGAAGATGATGACATTGATGAGGTCTTTGGAGAGGAAAGGGGAAGGAAGGTGGGCTCGAAGGGGTCCGACTCTGTTCCAGGGACTCCCTCAGATCGATCATCCGGGTTGCCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCTACCGTTAGGAACAAGTTGGCTAACGGATCATATTCAACTTTGGAGCAGTTTGAGCGTGACGTATTTCTGATATGCTCAAATGCAATGCAATACAATTCACCAGAAACCATTTATCACAAACAGGCACGTTCCATTCAAGAGCTTGGCAAGAAGAAATTTGAGAGGGTAAGAATTGAAGTCGGACGCTCGGAGAAAGAGTTGAAGTTGGAGCAGAGTACAAAATTCAATTCATACATCAAGAAACAACCACCAAAGAAACCCTTTTTCAGGACTTTTCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACACTTGCTGGCACGGGCGATGTACAGAACAGTTCCAATCCAATCCATGGTGCTCACTGTGAGGTTCCTAACAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCTTCCTTGATACTACTAATCTGGACAGGGCTGAAGAGCTCTTCTCAGGAAAGGGTCTTCTAGGTAAATTAGGGAGAAAGACATCTGTGTTTGATGACAACCGCCGTGCAACTTACAATATTTCTAATTCACTAGCGCCAAGATCGGAGTCGATATTTTCAACCTTTGAGGATGAAATAAGACAGCTTGTTGCGGTTGGGCTTCATGCGGAGTATTCCTATGCAAGGAGTCTGGCTCGATTTGCTGCGACACTCGGTCCTAGTGCGTGGAAAGTTGCATCCCAGAGGATTCAGCAAGGTGTACCTGTTGGATGTAAATTTGGCCGTGGTTGGGTTGGAGAATACGAGCCACTTCCAACACCAGTATTATTGTTTGAGAACAACAACCAGAAGGAACTTGGTTTTAATAATAACATGCATTCTACCAGCGAATTAAGAAAGGATGGAAAGCCTTCAGACACTCCTTTGCCGAAGAAGGAATATCCTCTGAGTGCTCCAAGTACAGAAGTGAATGGTCTCGCTAGAGGATCCACCTTAGATGGGAAACCATCTTTCTTTAGGTCCACCACCCCAAGTACCGATCTATCTCCACGGAAAAACCGACAGACCAAGAATTTTACAGACGGAGAGAAGGTTAGAAACCAAGTTGAGTTAAATTCCTTGCCCTCATTTAAACAAAATAATGTTGATCTTGGTGTAGAGAAGCAGCTTCCAGCCAATCTGAATATGACTACTAGATCTAGAGATATTTCGTCGGTAAACTTAAATCTTGTGCAATCTGCGACATATAAACTCCCCAGTGTTAATGGCGTGGTGACCGGAGGATTGCCTAATGGTAAATTCCCGAGCAATTGTCTGAATAGTCCACGGGCTGCTGTATCGTCTCCTAGCTTGCCTTCTCAAACAGCTCCAGTGGCAACTTCCCATGGACAGGACTTACACCCCAGTAAGCCGGTACAATTGATGAGAATGATGATACCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTCATCTGATTCTCTGCCAGCTTTATCATCAGCTCCTTCTATAATGAGAGACGATTCTAATAATGCTGCTGCAGTAGCTTCTCGTGCATGGATGTCCATTGGGGCTGGAGGGTTTAAACAAGTCAGAGATAATTCCACACCTAAAAGTCAAATCTCTGCAGATTCACTGTATAATCCAGCTCGGGAATTTCATCCACAAATGACACGAGCATGGGGGGAGTTTCGTGCTGGAGGCAATCAGCTTCAGTCTGAGAAGAGTAATTTCCCTGTGCAGGCATTTGTTCCACAAGCCACTCTTGTAGCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAGTTCAGGCTGACATGTCTAAGTTCCAGTTGCAGTCGACTTGGCAAGCTCTCAGCCCACATAACCAACCAAGGAAGAAACACGAAATGCTTCCTCCCGACTTGAATATTGGTTTTCATTCTCCTGGGTCTCCCGTGAAACAATCCTCTAGTGTTCTGGTTGACTCCCAGCAGCCAGACCTGGCTTTGCAACTTTAA 2646 46.26 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEEDDEDEEENERRREKKLKLVVKLNQSRDGENLSPVARLSRSGARREDAAEYGSSASEGEDEPERKPLKKRRIGGGEEEDEDEDGDENEDDDIDEVFGEERGRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFERDVFLICSNAMQYNSPETIYHKQARSIQELGKKKFERVRIEVGRSEKELKLEQSTKFNSYIKKQPPKKPFFRTFQEPIGSDFSSGATLAGTGDVQNSSNPIHGAHCEVPNNIDGQVEGSSSFLDTTNLDRAEELFSGKGLLGKLGRKTSVFDDNRRATYNISNSLAPRSESIFSTFEDEIRQLVAVGLHAEYSYARSLARFAATLGPSAWKVASQRIQQGVPVGCKFGRGWVGEYEPLPTPVLLFENNNQKELGFNNNMHSTSELRKDGKPSDTPLPKKEYPLSAPSTEVNGLARGSTLDGKPSFFRSTTPSTDLSPRKNRQTKNFTDGEKVRNQVELNSLPSFKQNNVDLGVEKQLPANLNMTTRSRDISSVNLNLVQSATYKLPSVNGVVTGGLPNGKFPSNCLNSPRAAVSSPSLPSQTAPVATSHGQDLHPSKPVQLMRMMIPERAPKQENSSNQSSSDSLPALSSAPSIMRDDSNNAAAVASRAWMSIGAGGFKQVRDNSTPKSQISADSLYNPAREFHPQMTRAWGEFRAGGNQLQSEKSNFPVQAFVPQATLVANEQQLQNRSMIYPQLVQADMSKFQLQSTWQALSPHNQPRKKHEMLPPDLNIGFHSPGSPVKQSSSVLVDSQQPDLALQL 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8248303 8253251 + CmaCh01G011240.1 Cma01g01124 286817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01124 881 MobiDBLite consensus disorder prediction 494 569 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 93 129 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 1 180 - -
Cma01g01124 881 ProSiteProfiles Bromodomain profile. 192 262 IPR001487 GO:0005515
Cma01g01124 881 MobiDBLite consensus disorder prediction 692 716 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 1 15 - -
Cma01g01124 881 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 881 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 33 48 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 648 676 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 130 148 - -
Cma01g01124 881 SUPERFAMILY Bromodomain 163 278 IPR036427 GO:0005515
Cma01g01124 881 MobiDBLite consensus disorder prediction 858 881 - -
Cma01g01124 881 Pfam Bromodomain 186 266 IPR001487 GO:0005515
Cma01g01124 881 PRINTS Bromodomain signature 209 225 IPR001487 GO:0005515
Cma01g01124 881 PRINTS Bromodomain signature 243 262 IPR001487 GO:0005515
Cma01g01124 881 PRINTS Bromodomain signature 225 243 IPR001487 GO:0005515
Cma01g01124 881 ProSitePatterns Bromodomain signature. 198 254 IPR018359 -
Cma01g01124 881 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 881 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 543 561 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 648 670 - -
Cma01g01124 881 CDD Bromodomain 180 276 - -
Cma01g01124 881 Gene3D - 179 299 IPR036427 GO:0005515
Cma01g01124 881 SMART bromo_6 173 281 IPR001487 GO:0005515
Cma01g01124 881 MobiDBLite consensus disorder prediction 836 881 - -
Cma01g01124 881 MobiDBLite consensus disorder prediction 62 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01124 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1373.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01124 Cma-Chr1:8248303 Cma19g00798 Cma-Chr19:7712954 4.43E-85 dispersed
Cma08g00242 Cma-Chr8:1341906 Cma01g01124 Cma-Chr1:8248303 4.97E-10 transposed
Cma01g01124 Cma-Chr1:8248303 Cma09g00958 Cma-Chr9:4822916 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01124 Cma_Chr01 FPKM 11.621912 14.066983 8.239478 8.917683 14.010111 13.219045 13.320004 14.937284 13.220894 12.983498