Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g01129 | ATGTTCGAGAACAATCCTGACCCCTTTCGAATGCGAATTCGTGGTGGAAACAAATGGATTCTTGCCGCTTTCCCCAAAATCTCTATAAATAATCCCCATACCGCTGGGCGTTGGTCTCATCATTCGTTGTCCGTTCTCTGTTCTTCACTACCTTCTCACGTCCAAATCCCATCCGCTTACGATCCATTCGCAGACGCCAAGGATTCCGATGCCCCGGGAGGCAAAGAGTATGTTCATATCCGCGTGCAGCAGAGAAATGGCAAGAAGTGCTTGACAACAGTCCAGGGTCTGAAGAAGGATTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTCTGTTGTAATGGTAACGTCGTCCAAGACAAAGAACTGGGGAAGATAATTCAGCTTCAAGGCGATCAGCGCAAGAACGTGTCTCAGTTCCTGGTTCAGGCTGGGATTGTGAAGAAGGATCAGATCAAGATCCATGGATTTTAA | 483 | 47.41 | MFENNPDPFRMRIRGGNKWILAAFPKISINNPHTAGRWSHHSLSVLCSSLPSHVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 8277250 | 8278581 | + | CmaCh01G011290.1 | Cma01g01129 | 286822 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g01129 | 160 | Pfam | Translation initiation factor SUI1 | 75 | 149 | IPR001950 | GO:0003743|GO:0006413 | |
| Cma01g01129 | 160 | CDD | eIF1_SUI1 | 76 | 159 | IPR005874 | GO:0003743 | |
| Cma01g01129 | 160 | TIGRFAM | SUI1_MOF2: translation initiation factor SUI1 | 54 | 160 | IPR005874 | GO:0003743 | |
| Cma01g01129 | 160 | PANTHER | BNAA10G09260D PROTEIN | 53 | 160 | - | - | |
| Cma01g01129 | 160 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 53 | 160 | - | - | |
| Cma01g01129 | 160 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 78 | 148 | IPR001950 | GO:0003743|GO:0006413 | |
| Cma01g01129 | 160 | SUPERFAMILY | eIF1-like | 49 | 160 | IPR036877 | GO:0003743|GO:0006413 | |
| Cma01g01129 | 160 | Gene3D | - | 41 | 160 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01129 | Cma09g00955 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01129 | Cma-Chr1:8277250 | Cma19g00930 | Cma-Chr19:8319318 | 7.61E-60 | dispersed | |
| Cma01g01129 | Cma-Chr1:8277250 | Cma09g00955 | Cma-Chr9:4806670 | 2.12E-69 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g01129 | K03113 | - | csv:101202908 | 211.46 |