Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01131 ATGCTATGCTTGTGCATTGAGATGTTCTTGTGTATTCTTGTTCTTGGTTATGTTCTGCTAGTGATTCCATTGCTTATTTGTGTAATAGTTACTCATACTATGGAAGGTACAATTCTTAGAAGGGTTATTCCATCAGACAACAGTTGCCTCTTCAATGCTGTTGGTTATGTTATGGACCATGACAAAGACAAGGCTACCGAGCTAAGACAGGTCATAGCTGCAACAGTAGCCAGTGATCCAACAAGGTATTCTGAAGCATTTCTTGGAAAGCCAAATGAGGAGTACTGTGCTTGGATTCTTGATTCAGAGAAGTGGGGAGCATTAGATTATGGGTTTCTGAATCGAAATCTATATTACTCAAGAGGAAGCGCCATTGAGCTTTCGATACTATCCGAATATTATGGACGTGAAATTGCAGCATATGACATCCAGACGACACGATGTGATTTGTATGGTCAGGAAAAGAAGTATTCAGAAAGGGTTCTGCTGATATATGACGGACTCCACTATGATGCTTTAGTTATGTCGCCATTTGAGGGAGCTCCAGAAGAATTTGATCAGACCATATTTTCTGTGAATAGAGACAGGAGCATTGGGCCCATTGAGGAGCAAGCTCTTCATTTTGTAAAAGAGCAGCAAAGGAAACGGAGCTTCACCGACACTGCCAACTTCACTCTGCGCTGTGGGGTTTGCCAAATTGGAGTCATCGGCCAAACGGAGGCTGTAGAACACGCAAAAGCAACGGGTCATGTCAACTTTCAGGAGTATAGATGA 774 42.51 MLCLCIEMFLCILVLGYVLLVIPLLICVIVTHTMEGTILRRVIPSDNSCLFNAVGYVMDHDKDKATELRQVIAATVASDPTRYSEAFLGKPNEEYCAWILDSEKWGALDYGFLNRNLYYSRGSAIELSILSEYYGREIAAYDIQTTRCDLYGQEKKYSERVLLIYDGLHYDALVMSPFEGAPEEFDQTIFSVNRDRSIGPIEEQALHFVKEQQRKRSFTDTANFTLRCGVCQIGVIGQTEAVEHAKATGHVNFQEYR 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8282139 8286583 + CmaCh01G011310.1 Cma01g01131 286824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01131 257 Gene3D - 27 222 - -
Cma01g01131 257 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 35 255 IPR039138 GO:0004843|GO:0016579|GO:0030433|GO:0101005
Cma01g01131 257 PANTHER UBIQUITIN THIOESTERASE OTU1 35 255 - -
Cma01g01131 257 ProSiteProfiles OTU domain profile. 38 176 IPR003323 -
Cma01g01131 257 SUPERFAMILY Cysteine proteinases 40 174 IPR038765 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01131 Cma-Chr1:8282139 Cma09g00954 Cma-Chr9:4795337 3.72E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01131 K13719 - csv:101222942 390.193