Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01134 ATGGAGCTCATGCCCAATCTAATGCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTTTCAATCGTCTCGACTTTCAGCGCTGAATCTGATTATGTTCGTCCTCAGCCCCGCCAAACTCTGCATTTTCCACGGAATCCGAAATCATCTTCTCAACCTCGGCAGGTGCATATCTCGCTAGCAGGGGACAAGCATATGAGGATCACATGGATTACTAATGATCATTCTGCTCCCTCTTTTGTTGAATATGGGACATTACCTGGAAACTATACTTCTGTTTCTCAAGGAGAGAGCACCTCGTACACTTACATTTTGTACAAGTCAGGAAAGATACACCACACAGTAATTGGGCCTCTAGAGGCCGGCACAGTTTATTACTACCGATGTGGTGGGGAAGGCTCTGAGTTCCAGCTGAAAACTCCTCCTTCCCAGTTGCCAATCACTTTTTCAGTGGCAGGGGATCTGGGCCAAACTGGATGGACCAAATCAACATTAGACCACATTGATCTGTGCAAATATGATGTGCTTCTACTTCCAGGTGACCTATCCTATGCCGATTACTTGCAGCATCGGTGGGACACGTTCGGTGAGCTCGTGGAGCCTCTTGCGAGTACGAGACCGTGGATGGTAACTCAAGGGAACCATGAAAAGGAGAGCATAATTCTATTTAAGTCTCCATTTGACTCGTATGATGCAAGATGGAAGATGCCATTTGAGGAGAGTGGATCGAGTTCGAATCTCTATTATTCTTTTGAAGTTGCTGGAACTCATGTGATTATGCTTGGATCGTACACTGATTATGATGAATCCTCAGATCAATATGCATGGTTGAAGGCTGATCTTGCAAAGGTGAATAAGGAAAGAACACCCTGGCTAGTAGTGTTATTCCATGTGCCATGGTACAACAGTAATAAAGCTCATCAAGGTGAAGGTGCAAGCATGATGGCAGCCATGGAGCCATTGTTATATGCAGCTGGTGCAGACATAATAATTTCTGGCCATGTCCATGCTTATGAACGCTCGAAACGTGTGTATGCTGGAAAATCTGATCCTTGTGGTGCTGTGCATATAACTATTGGCGATGGAGGAAACCGAGAAGGTTTAGCTCACAAGTACATTGCACAGCCTGAATGGTCGGTGTTTCGAGAAGCTAGTTTCGGGCATGGGGAGCTGAAGATAGTGAATTCAAGTAATGCATTTTGGAGTTGGCATAGAAATGATGATGATGAACCAGTGAAGTCTGATCAAGTATGGATAACCTCATTGGCAGCCTCTGGTTGTGCTGCTGAGAAGAACCATCAACTGAAGAAATTCACATGA 1317 45.1 MELMPNLMLFLFLFLFLFLSIVSTFSAESDYVRPQPRQTLHFPRNPKSSSQPRQVHISLAGDKHMRITWITNDHSAPSFVEYGTLPGNYTSVSQGESTSYTYILYKSGKIHHTVIGPLEAGTVYYYRCGGEGSEFQLKTPPSQLPITFSVAGDLGQTGWTKSTLDHIDLCKYDVLLLPGDLSYADYLQHRWDTFGELVEPLASTRPWMVTQGNHEKESIILFKSPFDSYDARWKMPFEESGSSSNLYYSFEVAGTHVIMLGSYTDYDESSDQYAWLKADLAKVNKERTPWLVVLFHVPWYNSNKAHQGEGASMMAAMEPLLYAAGADIIISGHVHAYERSKRVYAGKSDPCGAVHITIGDGGNREGLAHKYIAQPEWSVFREASFGHGELKIVNSSNAFWSWHRNDDDEPVKSDQVWITSLAASGCAAEKNHQLKKFT 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8310729 8315180 + CmaCh01G011340.1 Cma01g01134 286827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01134 438 Gene3D - 143 427 IPR029052 -
Cma01g01134 438 PANTHER ACID PHOSPHATASE RELATED 14 431 IPR039331 GO:0003993
Cma01g01134 438 Pfam Purple acid Phosphatase, N-terminal domain 52 133 IPR015914 GO:0003993|GO:0046872
Cma01g01134 438 SUPERFAMILY Purple acid phosphatase, N-terminal domain 39 141 IPR008963 GO:0003993|GO:0046872
Cma01g01134 438 SUPERFAMILY Metallo-dependent phosphatases 145 411 IPR029052 -
Cma01g01134 438 PANTHER PURPLE ACID PHOSPHATASE 18 14 431 - -
Cma01g01134 438 CDD MPP_PAPs 145 420 IPR041792 -
Cma01g01134 438 Pfam Iron/zinc purple acid phosphatase-like protein C 353 408 IPR025733 -
Cma01g01134 438 Gene3D - 51 142 - -
Cma01g01134 438 Pfam Calcineurin-like phosphoesterase 150 337 IPR004843 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01134 K22390 ACP7; acid phosphatase type 7 - csv:101213952 801.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01134 Cma09g00948 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01134 Cma-Chr1:8310729 Cma03g01161 Cma-Chr3:7800779 5.48E-176 dispersed
Cma10g00063 Cma-Chr10:236726 Cma01g01134 Cma-Chr1:8310729 2.72E-25 dispersed
Cma11g01090 Cma-Chr11:6004373 Cma01g01134 Cma-Chr1:8310729 3.66E-79 dispersed
Cma12g00436 Cma-Chr12:2279538 Cma01g01134 Cma-Chr1:8310729 6.84E-76 dispersed
Cma01g01134 Cma-Chr1:8310729 Cma09g00948 Cma-Chr9:4762645 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g498 Blo03g00564 . . . . . . . . . Cma01g01134 Cma09g00948 . Car09g00861 . Cpe06g00763 Cpe02g00767 . . . . . . . . . . . . . . . . . . Lsi04g01205 . . . . . . . Bpe11g00545 . . Bma14g00341 . Cmo01g01185 Cmo09g00946 . . . Car16g00545 . . . . . . . . . Cla05g01492 Cam05g1608 . Cco05g1637 Clacu05g1588 Cmu05g1491 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008020 0 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01134 Cma_Chr01 FPKM 8.029677 9.730446 39.680782 35.006046 9.935707 11.677611 9.008567 37.512081 37.262802 39.149818