Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01139 ATGGTGCAGATTCTTCTCCATTCATCAGCCCCATTTCTTCTCCAGTGCTGTTCTTCTCCTCCTACCTCCGTCAGGGGAATGCATAGCAAAGTAATATTGAAAAACAATATTGAGCAACCTCCTCTAAGAAAGCTTGTGTCCCAGCATGTACTATCTGGATTTGCTGCTTCATTGATATTCCTCACTCAACCAAACCAGGCTATCTCAGCCGATCTATCTCGTCACGAAATCTTTTACCAGCTTGCAAGTGCAGAGAATACTGCAAGCCCTCCGTTTGAGAGTGATTCTGATGGAGGAGGGAGATTGATGATGATGAGAGGGATGACAGCAAAAAATTTCGATCCTGTTAGGTACTCTGGAAGATGGTTCGAAGTTGCTTCACTTAAACGCGGATTTGCTGGACAAGGTCAGGAAGACTGCCACTGCACCCAGGGTGTATACACATTTGATATGGCAACACCGGCGATACAAGTAGATACCTTTTGTGTTCATGGAAGCCCGGACGGATATATAACTGGGATAAGAGGAAGAGTTCAGTGCCTTTCAGAGGAGGATCTACAGAAAAACGCAACCGAGCTGGAAAACCGGGAGATGATCAAGGAGAAATGTTACCTGCGCTTTCCAACATTGCCATTTATCCCTAAGGAGCCGTATGATGTCATTGCAACTGATTATGACAACTTTGCTTTAGTTTCTGGTGCAAAAGACCTTAGTTTTGTTCAGATCTATTCAAGAACGCCGAACCCGGGACCCGAATTCATAGAGAAGTACAAGTCGTACTTGGCGAATTTCGGGTATGATCCAAGTAAAATCAAGGACACTCCTCAAGATTGTGAAGTAATGTCAAACAGTCAGCTAGCTGCAATGATGTCAATGTCTGGAATGCAACAGGCTTTGACAAACCAGTTTCCAGATCTTGGGCTAGATGCTCCTATTGCACTCAACCCCTTCACTAGTGTATTTGATACTTTCAAAAAGCTTTTAGAGCTCTATTTCAAGTAG 1002 43.91 MVQILLHSSAPFLLQCCSSPPTSVRGMHSKVILKNNIEQPPLRKLVSQHVLSGFAASLIFLTQPNQAISADLSRHEIFYQLASAENTASPPFESDSDGGGRLMMMRGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDMATPAIQVDTFCVHGSPDGYITGIRGRVQCLSEEDLQKNATELENREMIKEKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDLSFVQIYSRTPNPGPEFIEKYKSYLANFGYDPSKIKDTPQDCEVMSNSQLAAMMSMSGMQQALTNQFPDLGLDAPIALNPFTSVFDTFKKLLELYFK 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8333440 8336033 - CmaCh01G011390.1 Cma01g01139 286832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01139 333 Gene3D - 108 290 IPR012674 -
Cma01g01139 333 CDD lipocalin_CHL 105 245 - -
Cma01g01139 333 ProSitePatterns Lipocalin signature. 112 125 IPR022272 -
Cma01g01139 333 PANTHER CHLOROPLASTIC LIPOCALIN 30 333 - -
Cma01g01139 333 PANTHER LIPOCALIN 30 333 IPR002345 GO:0036094
Cma01g01139 333 Pfam Lipocalin-like domain 116 276 IPR000566 -
Cma01g01139 333 SUPERFAMILY Lipocalins 109 289 IPR012674 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01139 - - - bhj:120085082 603.594
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g473 Blo03g00573 . Bda07g00349 . . . . . . . Cma01g01139 . . . . . Cpe02g00761 . . . . . . . . . . . . . . . Cone9ag0091 . . Lsi04g01219 . Chy04g00975 . . . . . Bpe11g00534 . . Bma14g00347 . Cmo01g01190 . . . . Car16g00551 . . . . . . . . . Cla05g01504 Cam05g1620 Cec05g1624 Cco05g1649 Clacu05g1606 Cmu05g1505 . . . . Cme04g00853
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009675 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01139 Cma_Chr01 FPKM 2.926772 3.572478 12.222339 10.4733 72.428551 67.906151 74.594162 6.974103 6.886089 7.846404