Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01142 ATGATCTGCGCGGTCAAACAATCTCCTAGGGCTATCATTTGCTCTGATGGTGTTATTCGACGCAAAATCTCCGTTCCCTCTCAGCGATCCTCGTTTCTTCCTCTACTTCCGCTACAAAAACCTCGAAACTCCGCTGTTTCTGTTCATAAACCTGTACATGTTTCATCGCTTGAGAAATTTGGGTCACTGGGGGTTCGTAAAGCTAATTTGATCAAATGCGAAGCTTACGAGGCTGAGCGATCGCAGCCGATCGATTCGAGCTTTGAGTTGCCGCAGAGTCCGACCCCTTCAGAGGCCGCCAAGAAGTTGAAGATAGGATCATACTTCGCTCTATGGTGGGCTTTGAACGTGGTTTTCAATATCTATAACAAGAAGGTTTTGAACGCTTACCCGTTTCCATGGCTGACTTCGACTCTGTCCCTCGCCGCTGGATCTCTGATCATGTTGATCTCATGGATGACAAGAATTGCAGAGGCGCCTAAAACCGATTTGGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTATTGCCCATACAATTGGACATGTTGCAGCGACCGTGAGTATGTCAAAGGTTGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTATTGGTTTCGAGGTTCTTGTTGGGCGAGACCTTCCCGCTTCCTGTCTACTTGTCGCTCCTCCCAATTATTGGTGGATGCGCTCTTGCTGCTGTGACCGAGCTCAACTTTAACATGACGGGTTTCATGGGTGCCATGATATCGAACTTGGCATTCGTATTCCGTAACATATTTTCGAAGAGGGGCATGAAGGGAAAATCCGTTAGCGGGATGAACTACTATGCATGTTTATCGATTTTATCTTTGCTAATCCTTACACCATTTGCATTTGCTGTGGAGGGGCCTCAGTTATGGGCTGCTGGATGGAAAACAGCCATATCTCAAATCGGACCTCATTTTGTTTGGTGGGTAGCAGCACAAAGTATATTCTACCATCTCTATAACCAAGTGTCTTACATGTCCTTGGACGAGATTTCTCCCTTGACGTTCAGCGTCGGAAACACCATGAAACGTATATCTGTCATCGTTTCTTCCATCATCATCTTCCACACGCCTGTGCAGCCAGTCAATGCTCTCGGAGCTGCCATTGCGATTCTCGGAACCTTTATATACTCGCAGGCAAAGCAATGA 1191 46.52 MICAVKQSPRAIICSDGVIRRKISVPSQRSSFLPLLPLQKPRNSAVSVHKPVHVSSLEKFGSLGVRKANLIKCEAYEAERSQPIDSSFELPQSPTPSEAAKKLKIGSYFALWWALNVVFNIYNKKVLNAYPFPWLTSTLSLAAGSLIMLISWMTRIAEAPKTDLEFWKSLFPVAIAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSILSLLILTPFAFAVEGPQLWAAGWKTAISQIGPHFVWWVAAQSIFYHLYNQVSYMSLDEISPLTFSVGNTMKRISVIVSSIIIFHTPVQPVNALGAAIAILGTFIYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8353848 8357343 - CmaCh01G011420.1 Cma01g01142 286835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01142 396 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 28 396 - -
Cma01g01142 396 Pfam Triose-phosphate Transporter family 103 392 IPR004853 -
Cma01g01142 396 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 103 395 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cma01g01142 396 PANTHER SOLUTE CARRIER FAMILY 35 28 396 - -
Cma01g01142 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01142 Cma16g00853 CCT
Cma01g01142 Cma16g00853 ECH
Cma01g01142 Cma09g00938 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01142 Cma-Chr1:8353848 Cma07g00218 Cma-Chr7:1012179 5.34E-78 dispersed
Cma01g01142 Cma-Chr1:8353848 Cma16g00853 Cma-Chr16:5052238 0 wgd
Cma01g01142 Cma-Chr1:8353848 Cma03g00528 Cma-Chr3:5032836 0 wgd
Cma01g01142 Cma-Chr1:8353848 Cma07g00303 Cma-Chr7:1339664 0 wgd
Cma01g01142 Cma-Chr1:8353848 Cma09g00938 Cma-Chr9:4699608 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01142 K15283 - csv:101220046 717.613