Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01144 ATGAACAACAATTACCCACAATACAATGAAGGTGCTGGCTCTTCTCACACATCCAACTCTCCTCAACGTGCCTCAAACTTTCCCATCTTCGATCAATCAGCATCAAACTCAAACTCGAATGTAAAAGGTAACGAGCTCCATAGAGCGAGCGACCTTCTGATGGCGGTGTCGGTGTGCACGGAGGCAAACTTTTCGAGAATCGCCGACCTCGCCGACACGGCGATGGACGAGCTCATAAAAGCAGCTCTTGATGGAGATCCTCTATGGATGCCCCAACAAAATGAAGAAGCTGAATCTTACTATACATTGATGGATATAATGAAAATGGTTGAGGTTGGAGAGCCTCCTTCTTCCAGCCTTCTTGACTTCGAACTTTTCAACACCAAATCCGACGCTGAATCCAACATCAACAACAACACAAATTTGGGCTTTAAAGACAATCAACAACAACAACAACAACACTATCTTCAAACTGAGTTTTCAAGACAAACTGAATTTGTCAAAATGGATCCACTCAGCATTGTTGGGTTTTTGATGGATTTGGAACAATGGTCACTTATCTTCTCGGACATTGTTTCAAGAGCAGCAATTCTTCAAATGTGGTCATCAATGGGACCGGGAGGGACTTACGATGGAACTTTGCAAGTGATGACAGCTGAGTTTCAGCTCGCCTCACCACTTGTGGAGACAAGAGAGAGTTACTTTGGGAGGTTTTGCAAGCAATTAGCTCCATACACATGGGGAGTTGTTGATATTTCCTTGGAAGATCTCTTCCCTTATCCATCCATTGGCTTTTGTAGAAAACCCTCTGGCTGTTTGATCCAAGCATGTCCTGATGGAATCTCTAAGGTCATGTGGGTTGAGCATGTGGAAGTTGACAACAGATGTGTTCAACCAATGTTCCAACCATATATCAACTCTGGTTTGGCATTTGGTGCAAAGAGATGGGTTTCTTCCCTGGTTAGATACTGCATTTGGCAAACTACTTTAGAGGCCAAGAGCACTTCAACAATCAATGGGGTTTCAATACTACAAGCTGGAAGGCTTAGTGTGTTGAAGTTGGCTGAGAGAATGACAAGGACCTTTTATAAGGTTGTGAGTGGTTCTAAAGAAAATCCATGGATGAAAATTCCCATTCCTGGACCTCATGACATTAGGGTTATGACCCAGAAAGCCAAAGAGAATGATCCTGGACGTCCTCCGTGTACATCGGTGATCTTTGCTACTTCAGCTCAAGTTCCGAACAATCCGAATGAAGTTTTCCAGTTCCTTCGTCATGAGAAGTCTCGAAACAAGGTAATGTTGAGATTAGTGCATTACTTCTCCAGACTTGGGGAAGTTCGAGACTTCATAAGTTCACAGTGGGACATCCTTTCATTTGGTTACGTCATCACGGAACTTGCCTGCATCATCAATGGAAACGACTCGAGAAACCGGGTGTCGATAATTCAAGTGAATTCTTCACCGAGAAAAGTCGAGGTCTTCTACCTGCAAGAGAGTTACTTCGACGCAACCGGATCTTATATAGTCTATGCACCTGTTGATCTCTTTGCCATGTCGATACTCTTACGTGGAGGAAACCCAGATAATGTGGCTATCTTGTCTTCTGGTTTTGTTGTCCTTCCAGATAACCTGAAAATGAATGGACAGGAAATTGAAGCTGATGGTAGCATCGTGACAGTGGCCCTCAACATCGTTGATCATTCAATAACTGAAAGGATCCCATTTGATTCAATGGTTTCCATGCATAGGATTATGAATGAAACTGTAGCCTCAATCAAACAGGCTTTCCAAGTACAACAATTTTAA 1809 43.17 MNNNYPQYNEGAGSSHTSNSPQRASNFPIFDQSASNSNSNVKGNELHRASDLLMAVSVCTEANFSRIADLADTAMDELIKAALDGDPLWMPQQNEEAESYYTLMDIMKMVEVGEPPSSSLLDFELFNTKSDAESNINNNTNLGFKDNQQQQQQHYLQTEFSRQTEFVKMDPLSIVGFLMDLEQWSLIFSDIVSRAAILQMWSSMGPGGTYDGTLQVMTAEFQLASPLVETRESYFGRFCKQLAPYTWGVVDISLEDLFPYPSIGFCRKPSGCLIQACPDGISKVMWVEHVEVDNRCVQPMFQPYINSGLAFGAKRWVSSLVRYCIWQTTLEAKSTSTINGVSILQAGRLSVLKLAERMTRTFYKVVSGSKENPWMKIPIPGPHDIRVMTQKAKENDPGRPPCTSVIFATSAQVPNNPNEVFQFLRHEKSRNKVMLRLVHYFSRLGEVRDFISSQWDILSFGYVITELACIINGNDSRNRVSIIQVNSSPRKVEVFYLQESYFDATGSYIVYAPVDLFAMSILLRGGNPDNVAILSSGFVVLPDNLKMNGQEIEADGSIVTVALNIVDHSITERIPFDSMVSMHRIMNETVASIKQAFQVQQF 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8366072 8370119 - CmaCh01G011440.1 Cma01g01144 286837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01144 602 CDD START_ArGLABRA2_like 65 324 - -
Cma01g01144 602 ProSiteProfiles START domain profile. 60 324 IPR002913 GO:0008289
Cma01g01144 602 Pfam START domain 152 324 IPR002913 GO:0008289
Cma01g01144 602 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 12 434 IPR042160 -
Cma01g01144 602 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 452 599 IPR042160 -
Cma01g01144 602 SUPERFAMILY Bet v1-like 68 324 - -
Cma01g01144 602 SMART START_1 125 326 IPR002913 GO:0008289
Cma01g01144 602 MobiDBLite consensus disorder prediction 1 42 - -
Cma01g01144 602 PANTHER PROTEIN FWA, PUTATIVE-RELATED 12 434 - -
Cma01g01144 602 PANTHER PROTEIN FWA, PUTATIVE-RELATED 452 599 - -
Cma01g01144 602 SUPERFAMILY Bet v1-like 347 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01144 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101212560 786.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01144 Cma-Chr1:8366072 Cma11g01832 Cma-Chr11:12238851 1.56E-118 dispersed
Cma01g01144 Cma-Chr1:8366072 Cma13g00725 Cma-Chr13:6447191 6.88E-112 wgd
Cma01g01144 Cma-Chr1:8366072 Cma19g00929 Cma-Chr19:8312158 6.97E-119 wgd
Cma01g01144 Cma-Chr1:8366072 Cma02g00163 Cma-Chr2:753284 8.97E-121 wgd
Cma01g01144 Cma-Chr1:8366072 Cma20g00628 Cma-Chr20:2926078 2.43E-116 wgd
Cma01g01144 Cma-Chr1:8366072 Cma03g00527 Cma-Chr3:5028468 7.01E-111 wgd
Cma01g01144 Cma-Chr1:8366072 Cma07g00302 Cma-Chr7:1335086 8.01E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g464 . . . . . . . . . . Cma01g01144 . . . . . Cpe02g00755 . . . . . . . . . . . . . . . . . . Lsi04g01227 . . . . . . . . . . . . Cmo01g01197 . . . . Car16g00556 . . . . . . . . . Cla05g01515 Cam05g1629 Cec05g1633 Cco05g1662 Clacu05g1614 Cmu05g1514 . . . . Cme04g00844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013609 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01144 Cma_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0