Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01150 ATGCCTTCCAAATCCAAAAATCTAAGCTCTCTATTCCGCTCCGCCATTATAGCTTCAAAACCTTCACAGAATCCCCAAGATGCAGCTCTCAAAAACTACGTCTCCGCTATCGATCCCTTCTCTCCCAGCACCTCTCTCTCCAAAGCCATCGATAAACGATCCATCAAGTCCGCGAACTCCAAGAAGCTTCCCCAGAAACTAAACTCTGACGTTCAGTTTCCTGCTCTCATTTTAGAAGAGCCGTCAGGGTCTGGGGATTCTATGAAGCATTTAACCAAGGCCATATCTTCCATTCTGTGCGAAGGCTCATCTGTTAGGTCTCCTGATGCTCAAGAAAATGGTGATGAGAACTCTCTGAAACAATTATTAGACATACCATGGTTTTCCAACATATCCAATCATAGCATATCATTGCGTCGCAGAGAAATATCCCGTGAAAGAAAGCAAAAATGGATATTCAAAAATAGCCAAAACTATAGGTTTAGTCAATTGGTTAGAAATTGTGCACAGAAGCTGGGGACTGATGTTACTCTAGAAGTCTTTGGTAAATTGGGACGAGAAACTGGTGTGAAAGAATACAATGCACTGATAGATATATGTTTAGAGAAGGCTAAGACAAGTAAAGACTTGGAGGTTGTATTGGAACATATTGCGAAGGTTTATCAGCTATTTAAATTAATGAAAGAACATGGTTTTCAATTAGAAGATGAAACTTACGGTCCAGTTCTTGCATATTTAATTGACATGGACATGATGGAAGAATTTAATTTTTTCTGTGAGGCTGTAAAGGATGGTAATCCAGGCTCGAATTCAAGGCTGGGTTACTATGAGATGTTGTTCTATGTTAAAATCAATGATGTAGAAAAAATTCAGGAGCTTTGTGAGCATGCTACAGCTCATGATGGAGTGGACAAGTACAGTTTACAAGAAAATTATTTGCTGGCCCTTTGTGAATGTGAGCAGAAGGAGGAACTTTTGCAGATGCTGGAAATTGTAGACATCACAAAACTTACGTCAACTGTACTCGCAGCTAACATCTTCAAGTGCTTGGGGAGATTATTACTTCACTCTATTGCAGAGAAGTTGCTTGTGGCGTTGAAAACTTCTGGGAATGGAGCAGAGAATATCCCTTACCTTATATATAATCATGTTGTCAGCATTCCAAATTTAGCGATTGAGGATATGGTTTCTAAGTTCAAGAGCATGCACTTCGAATTGGACATCAAGCCTTCATCTGTTTCATATGAGAAGCTCATCTGTTACTGTTGTGGTTCACTTAAGGTGCATATGGCTCTTGATATAGCAAATGAAATGTGTGATGCAGATTTCACACCATCCACAGATGTCTTGCACTCCATTTTACATGCTATGGATGAAGGCTGTGAGTTTAATTTGGTTCATCAAGTCTATTCACTCATATGTCGCCACAACCTGAAGCCGGATAGTGAAGTGTTCAGGAGAATGATAAGTCTGTGCATCAAGATGAAAGACTTTAATGGTGCCTATGACATGCTTAAGGAATCTGAGAAAATGAACTTTACTTCTACAGCTAGCATGTACAATGCTATCATGGCCGGATACTTCCGAGAGAAGAACACTTCTGATGGATTGATGGTTCTCAAGCAAATGGAACTTGCGGATGTAAAACCAGATTCCAAGACTTTCAGCTATTTGATCAGCAATTGTGAATGTGAGGAGGATATTATCAAGTATTATGAAGAGCTGAAGAGTTCTGGAGTTCAAGCGACAAAGCATATTTTCATGGCCCTTATAAATGCATATGCTGCTCATGGACAATTTGAGAAGGCAAAACAGGTTATATCAGATGAAGAAATACCAGTCAAGAACTTGAATGAAATTAGAAGTGTGCTAGTCTCTGCTCTTGCTTCAAATGCGCAAATAGCTGATGCTCTGAAAATTTATGATGAAATGAAACAAGCTGGATGTAATTTGGAGCCCAAGGCTGTCATCAGTCTTATTGAGCACTATCCATTCGATGGGCCGATGAACAGAATATTTCAGTTACTTGGTGAATTCCATCATGATCTCGACCACTGGATAGATTGTTGTCGCAGAATTCTCTTGTTTTCTGTAAAACACAATGATCTGAGTTCGACCGTCGATCTATTGAAGCAGCTCAGTTACAGATGCTGTAATGATGAAGTGATGATGGGAGTTGCTTTTGATGAGATTTTTTCCCTCATTGCTGAGTCCGAGCCATCATATTTAGAAACAGGCCTGCAATTGCTTCAATTCATAAAGAATGATCTCGGTCTATCTCCCCCACGTAGATGCCTTGATTTTCTCCTGGGTGCTTGTGCCAACGCCAAAGATGCAGAGAGCTCTCTCCTCATCTGGAAAGAATATGAAAAAGCTGGCCTCCCACACAATACTATTAGTTACTTGCGGATGTATCAAGCTCTCTTAGCATCTGGGGACCAAAAATCTGCAAAAGTTTTGCTTGAAAAAATTCCGAAAGACGATGCTCACGTTTGCTATGTAATCAAGGAATGCGAATCGGTTTATGTTGCCTCTTCCTCAGTAAAGAAGAAAAAAGGAAGACACAAGAAAAGATGCTGA 2580 40.08 MPSKSKNLSSLFRSAIIASKPSQNPQDAALKNYVSAIDPFSPSTSLSKAIDKRSIKSANSKKLPQKLNSDVQFPALILEEPSGSGDSMKHLTKAISSILCEGSSVRSPDAQENGDENSLKQLLDIPWFSNISNHSISLRRREISRERKQKWIFKNSQNYRFSQLVRNCAQKLGTDVTLEVFGKLGRETGVKEYNALIDICLEKAKTSKDLEVVLEHIAKVYQLFKLMKEHGFQLEDETYGPVLAYLIDMDMMEEFNFFCEAVKDGNPGSNSRLGYYEMLFYVKINDVEKIQELCEHATAHDGVDKYSLQENYLLALCECEQKEELLQMLEIVDITKLTSTVLAANIFKCLGRLLLHSIAEKLLVALKTSGNGAENIPYLIYNHVVSIPNLAIEDMVSKFKSMHFELDIKPSSVSYEKLICYCCGSLKVHMALDIANEMCDADFTPSTDVLHSILHAMDEGCEFNLVHQVYSLICRHNLKPDSEVFRRMISLCIKMKDFNGAYDMLKESEKMNFTSTASMYNAIMAGYFREKNTSDGLMVLKQMELADVKPDSKTFSYLISNCECEEDIIKYYEELKSSGVQATKHIFMALINAYAAHGQFEKAKQVISDEEIPVKNLNEIRSVLVSALASNAQIADALKIYDEMKQAGCNLEPKAVISLIEHYPFDGPMNRIFQLLGEFHHDLDHWIDCCRRILLFSVKHNDLSSTVDLLKQLSYRCCNDEVMMGVAFDEIFSLIAESEPSYLETGLQLLQFIKNDLGLSPPRRCLDFLLGACANAKDAESSLLIWKEYEKAGLPHNTISYLRMYQALLASGDQKSAKVLLEKIPKDDAHVCYVIKECESVYVASSSVKKKKGRHKKRC 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8405696 8416878 + CmaCh01G011500.1 Cma01g01150 286843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01150 859 Pfam PPR repeat 623 649 IPR002885 -
Cma01g01150 859 Pfam PPR repeat 587 607 IPR002885 -
Cma01g01150 859 Pfam PPR repeat family 519 562 IPR002885 -
Cma01g01150 859 Gene3D Tetratricopeptide repeat domain 282 457 IPR011990 GO:0005515
Cma01g01150 859 Gene3D Tetratricopeptide repeat domain 730 852 IPR011990 GO:0005515
Cma01g01150 859 Gene3D Tetratricopeptide repeat domain 458 568 IPR011990 GO:0005515
Cma01g01150 859 Gene3D Tetratricopeptide repeat domain 569 729 IPR011990 GO:0005515
Cma01g01150 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cma01g01150 859 PANTHER OS02G0132600 PROTEIN 23 856 - -
Cma01g01150 859 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Cma01g01150 859 TIGRFAM PPR: pentatricopeptide repeat domain 623 650 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01150 - - - cmos:111445890 1617.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01150 Cma-Chr1:8405696 Cma02g00695 Cma-Chr2:4240532 5.26E-14 dispersed
Cma01g01150 Cma-Chr1:8405696 Cma19g00618 Cma-Chr19:6694118 6.79E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g434 . . . Bda09g00385 . Bpe08g01139 . . . . Cma01g01150 . . . . . Cpe02g00751 Bhi09g01943 . . . Hepe01g1308 . . . . . . . . . Cone6ag0086 . . . Lsi04g01240 . . . . . . . . . Bma07g01313 . . Cmo01g01202 . . . . Car16g00562 . . . . . . . . . Cla05g01536 Cam05g1643 Cec05g1649 Cco05g1687 Clacu05g1637 Cmu05g1532 Cre05g1642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006190 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 5 1 2 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01150 Cma_Chr01 FPKM 3.417281 2.9594 4.114832 3.468601 5.162818 3.475797 4.502954 6.670153 5.585371 6.749542