Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01152 ATGGTATCCCCTGAAAATTCTAATTGGTTGTTTGATTATGGATTGATCGACGACATCCCCGTATCGGATGCGAATTTCCCAGTCACCAGTTCGAGCTTCTCGTGGGCTGTTCAACCCTTTGATGGCACCCATGATGTCGGTGTGGAAATTGATGGGTCATCGGCAGATCTAGATGGTCGTCTAGAATCTGGCTCCAAGAAGAGGGTCAGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAAAAATTGCGGAGAGATAGGCTCAACGAGAAGTTTCTGATACTGGGCTCCATTTTGGACCCTGGAAGGACACCCAAAACCGACAAGGCTGCAATTTTAGTTGATGCTGCTCGAATGGTGAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTGCAGGATAAGATTAAAGAATTGAAGGCTGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTGAAGGCCGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCTATGCATGCTCACCCTGCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGAGTCAAGCTCCTGGCGGTAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTAGCCATGTGGCAGTTCATGCCTCCTGCTGCAGTCGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCCTAA 711 48.8 MVSPENSNWLFDYGLIDDIPVSDANFPVTSSSFSWAVQPFDGTHDVGVEIDGSSADLDGRLESGSKKRVRSDSCSGSSSKACREKLRRDRLNEKFLILGSILDPGRTPKTDKAAILVDAARMVNQLRSEAQKLKESNSSLQDKIKELKAEKNELRDEKQRLKADKEKLEQQVKSMHAHPAGFLPPPIPTFAAQSQAPGGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8424445 8427488 - CmaCh01G011520.1 Cma01g01152 286845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01152 236 CDD bHLH_AtILR3_like 80 155 - -
Cma01g01152 236 Coils Coil 116 178 - -
Cma01g01152 236 Gene3D - 66 124 IPR036638 GO:0046983
Cma01g01152 236 MobiDBLite consensus disorder prediction 51 81 - -
Cma01g01152 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Cma01g01152 236 SMART finulus 81 132 IPR011598 GO:0046983
Cma01g01152 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Cma01g01152 236 PANTHER TRANSCRIPTION FACTOR ILR3 1 236 - -
Cma01g01152 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Cma01g01152 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma01g01152 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01152 Cma09g00924 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01152 Cma-Chr1:8424445 Cma04g00938 Cma-Chr4:4834656 1.56E-111 dispersed
Cma07g00427 Cma-Chr7:1835142 Cma01g01152 Cma-Chr1:8424445 2.18E-22 dispersed
Cma09g00925 Cma-Chr9:4614766 Cma01g01152 Cma-Chr1:8424445 6.67E-34 transposed
Cma01g01152 Cma-Chr1:8424445 Cma13g00706 Cma-Chr13:6387711 2.30E-74 wgd
Cma01g01152 Cma-Chr1:8424445 Cma16g00846 Cma-Chr16:4970716 9.33E-119 wgd
Cma01g01152 Cma-Chr1:8424445 Cma02g00147 Cma-Chr2:699901 1.63E-71 wgd
Cma01g01152 Cma-Chr1:8424445 Cma20g00638 Cma-Chr20:2971125 9.00E-87 wgd
Cma01g01152 Cma-Chr1:8424445 Cma09g00924 Cma-Chr9:4612273 2.27E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34316 PF00010 HLH 1.50E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01152 - - csv:101215402 401.749