Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01154 ATGGTTGGACCTGCTATTAATGTAAGGACCCGTTTGTCCTTCTCCGACGTTAACGGCGGAGAGGAGCTTTGTCTTACCAGTGCTCCGACGAGCATTGCCGGCTCTGAGTGCGGTGGCATTGAGTTCACTAAAGAGGACGTTGAGGCTTTGTTGAATGAGAAGCTTAAAAGGAAGGATAGGTTTAATCTAAAGGAAAAATGTGATAACATGGTGGAATACATTAAAAGGCTTAAACTCTGCATCAAATGGTTCCAAGAGCTTGAATATAGCTACTTATTAGAGCAGAGGAAGCTACAAGATGAGCTAGAAACCTCTGAGATCAAGTCCAGTGAAATGGAGATGATAGTGAAGAACAAGGAAGAGGAATTGAATTCTATCATTGTAGAACTCAGAAAGAACAATGCATTCTTGCGAGAGAAATTCACACAAGAAGAATCCGAGAAGTTGGCTGCAGTAGAGTCTCTCACCAAGGAGAAAGAGGCTAGGCTTATTATGGAGAGGTCACAGGCTTCGATCTCCGAGGAGCTTGCAAGGGCTCAACGTGAGCTCTCGAGTGCAAATCAAAAGCTATCGTCTCTTAATGAGATGTACAAGAGGTTGCAGGATTACATTACGAGTTTACAACAATATAATGGAAAACTTCATACTGAGCTTTCGACTGCTGAAAACGACCTCAAACGAGTAGAGAAAGAAAAAGCTGCCATGGTAGAGGATCTCAGTATGATCAAGGGCGAACTTGCATTGTCTAAAGCTTCTCAAGACGAGGCATTAAAGCAGAAGGATGCTATGCTGAACGAAGTTACGTGTTTAAGACGAGAAATACAACAGGTTAGAGACGATCGAGATCATCAACTCTCTCTGGTGCAGACTTTGACAGATGAAGTAGAGAATTGCAGGGAGTCAGCAGAAAAGTACTGTGAGGAGCTGGATGAAATTAAGGCAAAAGCAAATGAATTAGAGGCAAGATGTTCTTCACAAAGCATTGAACTAAAAACATTGCAAAATCATCTAGCTGCTGCAGAAAACAAGCTGCAGGTCTCTGATCTAACTGCAATGGAGACGATGCACGAATTTGAAGATCAACAGAGACTCGTAAGTGAGTTACTAGCACGGCTTGGAGATGCAGAAACTAAGCTAATGGAAGGAGAGATGCTTCGAAAGAAACTGCATAATACCATATTGGAATTGAAAGGGAACATTCGTGTGTTCTGTCGAGTGCGACCTCTGTTACCTGATGAACGTTCTAGCCCTGAAGGAAATTTCATCTCGTACCCGTCATCAGTCGAATCGCTTGGACGAGGAATCAATCTGGTGCAAAATGGGCAACGACATTCTTTCACGTTCGACAAGGTTTTTGCACCGGAAGCGACACAAGAAGACGTCTTTGTAGAGATTTCCCAGCTTGTACAAAGCGCCCTCGACGGTTATAAGGTTTGTATATTTGCGTACGGTCAAACGGGTTCGGGAAAAACGTATACAATGATGGGTAAAACAGGGATCCTTGAGGAGAAGGGACTGATACCTCGATCATTGGAACAAATATTTCAAACCAGGCAATCTCTTCAACCTCAGGGTTGGAAATATGATATGCAGGTATCGATGTTGGAAATATACAACGAAACGATCCATGATTTACTATCATCAAACCGATCAGCTCCAGATGTGCTACGAGCAGAAAATGGTTCTCCTCTGAAGCCGTACTCGATCAAACACGATGCAAACGGAAACACACAAGTGTCTGATCTTACAGTTGTAGATGTTCGTAGCGCCAAGGAGGTCTCGTTTCTATTACAGGAAGCTTCTCGGAGCAGATCCGTTGGCAAAACCCAAATGAACGAGCAATCATCGAGAAGTCATTTTGTGTTCACTCTTAAAATATCCGGTGTCAATGAGAGTACTGATCAACAAGTACAAGGCGTTTTGAATTTGATTGATCTTGCTGGGAGCGAGCGTCTTTCCAAGAGCGGATCGACGGGGGATCGACTGAAAGAAACCCAAGCCATAAATCGAAGTTTATCGTCTTTGAGTGATGTTATATTTGCTTTGGCAAAGAAGGAAGAACATGTGCCATTTAGAAACTCAAAGCTTACATATCTTCTTCAGCCTTGTCTCGGTGGAGATTCGAAGACGTTGATGTTTGTAAATATCTCTCCCGATTCCTCCTCTGCTAACGAGTCGCTCTGCTCGCTTCGCTTTGCTGCACGAGTCAATGCTTGCGAGATCGGTACTCCTCGGCGTCTAACCAATACACGACCTTAA 2259 43.51 MVGPAINVRTRLSFSDVNGGEELCLTSAPTSIAGSECGGIEFTKEDVEALLNEKLKRKDRFNLKEKCDNMVEYIKRLKLCIKWFQELEYSYLLEQRKLQDELETSEIKSSEMEMIVKNKEEELNSIIVELRKNNAFLREKFTQEESEKLAAVESLTKEKEARLIMERSQASISEELARAQRELSSANQKLSSLNEMYKRLQDYITSLQQYNGKLHTELSTAENDLKRVEKEKAAMVEDLSMIKGELALSKASQDEALKQKDAMLNEVTCLRREIQQVRDDRDHQLSLVQTLTDEVENCRESAEKYCEELDEIKAKANELEARCSSQSIELKTLQNHLAAAENKLQVSDLTAMETMHEFEDQQRLVSELLARLGDAETKLMEGEMLRKKLHNTILELKGNIRVFCRVRPLLPDERSSPEGNFISYPSSVESLGRGINLVQNGQRHSFTFDKVFAPEATQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKTGILEEKGLIPRSLEQIFQTRQSLQPQGWKYDMQVSMLEIYNETIHDLLSSNRSAPDVLRAENGSPLKPYSIKHDANGNTQVSDLTVVDVRSAKEVSFLLQEASRSRSVGKTQMNEQSSRSHFVFTLKISGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINRSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDSSSANESLCSLRFAARVNACEIGTPRRLTNTRP 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8429785 8434860 - CmaCh01G011540.1 Cma01g01154 286847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01154 752 Gene3D Kinesin motor domain 347 741 IPR036961 -
Cma01g01154 752 PRINTS Kinesin heavy chain signature 475 496 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01154 752 PRINTS Kinesin heavy chain signature 609 626 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01154 752 PRINTS Kinesin heavy chain signature 640 658 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01154 752 PRINTS Kinesin heavy chain signature 689 710 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01154 752 Coils Coil 253 280 - -
Cma01g01154 752 Coils Coil 288 343 - -
Cma01g01154 752 SMART kinesin_4 397 747 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01154 752 ProSitePatterns Kinesin motor domain signature. 639 650 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma01g01154 752 Pfam Kinesin motor domain 405 737 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01154 752 Coils Coil 169 203 - -
Cma01g01154 752 Gene3D - 168 346 - -
Cma01g01154 752 ProSiteProfiles Kinesin motor domain profile. 399 739 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01154 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 737 IPR027417 -
Cma01g01154 752 CDD KISc_C_terminal 397 741 - -
Cma01g01154 752 Coils Coil 211 238 - -
Cma01g01154 752 Coils Coil 120 147 - -
Cma01g01154 752 PANTHER KINESIN-LIKE PROTEIN 8 752 - -
Cma01g01154 752 PANTHER KINESIN-LIKE PROTEIN KLP-3 8 752 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01154 K10405 KIFC1; kinesin family member C1 - csv:101215636 1342.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01154 Cma09g00922 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01154 Cma-Chr1:8429785 Cma04g00636 Cma-Chr4:3259184 2.27E-93 dispersed
Cma08g01075 Cma-Chr8:6696503 Cma01g01154 Cma-Chr1:8429785 6.35E-34 dispersed
Cma01g01154 Cma-Chr1:8429785 Cma13g00704 Cma-Chr13:6379957 0 wgd
Cma01g01154 Cma-Chr1:8429785 Cma18g00327 Cma-Chr18:1749172 0 wgd
Cma01g01154 Cma-Chr1:8429785 Cma09g00922 Cma-Chr9:4600528 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01154 Cma_Chr01 FPKM 8.525097 10.027117 2.114457 2.498192 12.764831 13.384739 12.897793 0.342764 0.423612 0.450841