Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01159 ATGGATTCTCGTCAACTGTTTGGATTTGGAGTCAATAGTGCAGGTTTTTCTTGTACTCCTTATTCCTCCGTTCCATCCTTACCTAATACCTTGCTTGGACCCTTGAAATTTAGTGTAAGAAATTCCCCGGCATCTTCTTCGTTTTTTTCGTCGTATTTTGAATTGGATTCATTTCTGGAGACTACGGTGAGTGATAATCAAGATCAGAGGAACTCCCCTGAGAATCTCTCTGGACTTGGCCCTTCTTGTAATTCGTCGTTTGAAACTAATCAAATAGCGTCGTCGTCGAATTTGGATCCGGGGTTGAATGCGTTTGTTTACAATGGATGCTCGAACGAGAATATAAGCTTCACGTTGAAACAATTGGAGAGTGTTCTTATGGGGCCGGATAATGAGGAAGTTGTGAGTAAGCCTGATGCTTCGTTTGGAGATAGTTGCAGGCCACAGATTATGGGGCAGAGGTCCTACTTATGGAGCCAAGATCGACAGGGTGAGTCGAATCTTGTACAGTCGCAGACGTTGCCGGTGTCGATAAGCCGGCGATCTCAAGCAGTTCACTTGGGGAAGCGCCAAAAATCGATGGATGAATCGATATTGCAGCAGGGAGGATCTCCATATGATAATTTGAAGGAGTTGCTGATTGAGTGTGCAAGAGCTTTAGCTGAAAACAGGATGGAGGATTTTGATAACTTGGTTGCCATAGCAAGAGGTGCTGTGTCTATCAGCGGAGAACCGATCCAGCGTCTCGGTGCTTACATGGTGGAAGGGTTGGTGGCAAGGAAAGAGGAGTCGGGGGCGAATATATACCGTGCTCTAAACTGTAGAGAGCCTGCAAGTGATGATTTGCTATCTTACATGCATATGCTATATGAAATCTGCCCTTACTTGAAGTTCGGTTACATGGCAGCTAACGGGGCGATTGCCGAAGCCTGCAGAAACGAAGATCGCATCCACATTATAGACTTCCAGATTACTCAGGGTACACAGTGGTTAACTCTTCTTCAGGCACTCGCAGCAAGGCCCGGTGGTGCTCCCCATGTGAGAATAACTGGTATCGACGACCCCGTTTCTAAGTATGCCCGTGGTGAGGGGTTGGAGGTCGTTGAGAGGCGGTTGGCTGAAGTCTCGAGGAAGTATGGAATACCAGTAGAGTTTCATGGATTACCCGTTTTTGCTCCAGACGTCACGCGTGGTATGCTTGATATCAGACCCGGGGAGGCTCTGGCTGTAAACTTCCCCTTGCAGCTTCATCATACCCCCGATGAAAGCGTTGACGTAAACAATCCACGGGACGGTTTGCTGAGAATGGTGAAGTCATTGTCCCCAAGGGTAGTAACTTTGGTAGAGCAAGAATCCAACACCAACACAACCCCTTTCTTCAACAGGTTTGTGGAAACTTTAGATTACTACTTAGCAATCTTCGAGTCCATTGATGTCACTCTACCAAGGAACAGCAAGAAGGGTATCAACATCGAGCAGCATTGTTTGGCGAAAGATATCGTTAATGTCATCGCTTGCGAGGGGAGGGAACGAGAAGAACGCCACGAGCTCTTCGGCAAGTGGAAAACAAGATTGACAATGGCAGGGTTCTGCCAGTTCCCTTTGAGCTCTTACGTCAACTCCGTCATCAGGAGCCTGCTCAGGTGCTATTCGGAGCATTACACTCTCGTCGAAAAAGATGGAGCAATGCTGCTGGGATGGAAAAACAGGAACCTGATATCTGCCTCGGCCTGGTATTGA 1740 47.47 MDSRQLFGFGVNSAGFSCTPYSSVPSLPNTLLGPLKFSVRNSPASSSFFSSYFELDSFLETTVSDNQDQRNSPENLSGLGPSCNSSFETNQIASSSNLDPGLNAFVYNGCSNENISFTLKQLESVLMGPDNEEVVSKPDASFGDSCRPQIMGQRSYLWSQDRQGESNLVQSQTLPVSISRRSQAVHLGKRQKSMDESILQQGGSPYDNLKELLIECARALAENRMEDFDNLVAIARGAVSISGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPASDDLLSYMHMLYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPGGAPHVRITGIDDPVSKYARGEGLEVVERRLAEVSRKYGIPVEFHGLPVFAPDVTRGMLDIRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPRVVTLVEQESNTNTTPFFNRFVETLDYYLAIFESIDVTLPRNSKKGINIEQHCLAKDIVNVIACEGREREERHELFGKWKTRLTMAGFCQFPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWY 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8466405 8468144 + CmaCh01G011590.1 Cma01g01159 286852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01159 579 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 19 578 - -
Cma01g01159 579 ProSiteProfiles GRAS family profile. 200 579 IPR005202 -
Cma01g01159 579 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Cma01g01159 579 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 578 IPR005202 -
Cma01g01159 579 Pfam GRAS domain family 209 578 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01159 Cma09g00916 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01159 Cma-Chr1:8466405 Cma20g00670 Cma-Chr20:3070596 9.42E-174 dispersed
Cma01g01159 Cma-Chr1:8466405 Cma09g00916 Cma-Chr9:4566670 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34317 PF03514 GRAS 4.10E-126 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01159 - - csv:101216606 945.651