Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01162 ATGGCTCTCAGATCGGCTGCGGCGGTGGCTTCTCGGTGTTTGAGGCGGCTCATTATAGGTACTTCATCTCGTACTCTACCGATAATCTCGCAGGCAATTTGGGATTGGGAGAAACTGGAATCGAGCACGAATGCCTTCGTTTCTGGGCGGCTTTTCTCTAGCACTTCAATTTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCAGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTTCTAACCTTTTTGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTAAATGAAGCCTTCGCAAAATTCGGAGAAGTTGTTCATGCAAGGGTTGTGACTGATCGAGTGACTGGATACTCTAAAGGATTCGGCTTTGTTAAATATGCTACTTTGGAGGATGCAGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGCACCATTCTGCTCCTCCGCATAGCCAGCGACCATATTAA 525 49.14 MALRSAAAVASRCLRRLIIGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSFIPPPLPPSAQQREKPEPSSNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQRPY 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8472072 8474738 - CmaCh01G011620.1 Cma01g01162 286855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01162 174 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 50 167 - -
Cma01g01162 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 147 IPR000504 GO:0003723
Cma01g01162 174 SMART rrm1_1 80 153 IPR000504 GO:0003723
Cma01g01162 174 PANTHER TRANSFORMER-2-RELATED 50 167 - -
Cma01g01162 174 Gene3D - 66 173 IPR012677 -
Cma01g01162 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Cma01g01162 174 SUPERFAMILY RNA-binding domain, RBD 59 162 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01162 - - - csv:101217072 250.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01162 Cma09g00914 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00773 Cma-Chr1:4149053 Cma01g01162 Cma-Chr1:8472072 5.23E-25 dispersed
Cma01g01162 Cma-Chr1:8472072 Cma13g01075 Cma-Chr13:8119493 3.19E-22 dispersed
Cma01g01306 Cma-Chr1:9342762 Cma01g01162 Cma-Chr1:8472072 1.36E-12 dispersed
Cma09g00736 Cma-Chr9:3500142 Cma01g01162 Cma-Chr1:8472072 1.70E-09 dispersed
Cma10g00914 Cma-Chr10:4548794 Cma01g01162 Cma-Chr1:8472072 4.73E-11 dispersed
Cma11g00862 Cma-Chr11:4364939 Cma01g01162 Cma-Chr1:8472072 9.51E-12 dispersed
Cma07g00968 Cma-Chr7:4685821 Cma01g01162 Cma-Chr1:8472072 2.12E-34 transposed
Cma01g01162 Cma-Chr1:8472072 Cma09g00914 Cma-Chr9:4556959 5.75E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g394 . . . Bda09g00380 . Bpe08g01145 . . . . Cma01g01162 Cma09g00914 . Car09g00831 Sed14g0466 Cpe06g00736 Cpe02g00740 Bhi09g01960 Tan01g4493 Cmetu08g1286 . Hepe01g1323 Mch11g1137 . . . . . . . . . . . Cone15ag1130 Lsi04g01255 . Chy04g01029 . . . . . . . Bma07g01319 Bma14g00366 . Cmo01g01216 Cmo09g00908 . . . Car16g00574 . . . . . . . . . Cla05g01553 Cam05g1661 Cec05g1666 Cco05g1706 Clacu05g1655 Cmu05g1549 Cre05g1661 . . . Cme04g00784
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005243 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01162 Cma_Chr01 FPKM 10.192983 9.084112 17.556496 17.154562 19.341951 15.245963 18.065838 49.41048 48.685223 47.306637