Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01165 ATGAAACGAGGATACTCAGAATCCCCATCGGCGTCTTTGGGGCCACCTCAATCCAGATTCAAGCACAACCCAGAAGGCGATACTGAGTTCTTAGAAGATGAAACCACCAAAATTTTTGCTCGGAAAGTGGCTGATCATTACAGTGCTAGGACAAATCAGACTTTAGAAGAGCGAGAAGCTAGTGTTATCATCCATTTAAAAAAGCTTAACAATTGGATTAAGAGTGTCTTGGTTCAGCTTTATGCTCGTCGAGGAGATGCCGTTCTCGACCTTGCCTGTGGCAAGGGTGGTGATCTTATCAAATGGGATAAGGCCAGAATTGGATATTATGTTGGCATTGATATTGCTGAAGGATCAATAGAAGATTGTCGTACTCGTTACAATGGTGACGCTGATCATCATCAACGTCGTAAAAAATTTTCATTTCCAGCCCGCCTCATATGTGGAGATTGTTATGAGGCAAGGCTGGATCATATCCTAGCAGATGATGCTCCGTTCGACATTTGCAGTTGCCAGTTTGCATTGCATTATTCTTGGTCTACCGAGGCTCGTGCACGACGCGCCTTGGCCAATATATCAGCTCTTCTCCGCCCAGGAGGTATTCTCATTGGTACCATGCCAGATGCTAACGTGATCGTCAAAAAGCTTAGAGAAGCTCAAGGCTTGACGTTTGGAAATAGCGTCTATTGGATACGCTTTGATGAAGAACATGCCGAAAAGAAATTTAACGCTTCCAGCCCGTTTGGTATAAAGTACTTGTTTCATCTAGAGGATGCTGTTGATTGCCCTGAATGGATTGTCCCTTTTCATGTTTTCAAATCATTGGCTGAAGAGTATGGCTTAGAGTTGGTTTTTGTCAAGAACTCACATGAATTCGTGCACGAGTACTTGAAAAAACCCGAATTCGTGGATCTAATGCGACGGCTTGGTGCCTTGGGTGATGGCAACCAAGATCAAAGCACGTTATCTCCAGACGAGTGGGAAGTGGCATATCTCTACCTTTCATTTGTCTTGAAAAAGCGAGGCCAACCCGACCGAGCACATGCACCGAATAGACGAGACAGAGGGCAAATGCAAATAGCAAAAGGGGACATAATGTACATAACTGACTAG 1113 44.38 MKRGYSESPSASLGPPQSRFKHNPEGDTEFLEDETTKIFARKVADHYSARTNQTLEEREASVIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEARLDHILADDAPFDICSCQFALHYSWSTEARARRALANISALLRPGGILIGTMPDANVIVKKLREAQGLTFGNSVYWIRFDEEHAEKKFNASSPFGIKYLFHLEDAVDCPEWIVPFHVFKSLAEEYGLELVFVKNSHEFVHEYLKKPEFVDLMRRLGALGDGNQDQSTLSPDEWEVAYLYLSFVLKKRGQPDRAHAPNRRDRGQMQIAKGDIMYITD 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8486853 8492037 + CmaCh01G011650.1 Cma01g01165 286858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01165 370 CDD AdoMet_MTases 88 203 - -
Cma01g01165 370 ProSiteProfiles mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. 22 347 IPR004971 -
Cma01g01165 370 Gene3D Vaccinia Virus protein VP39 59 342 IPR029063 -
Cma01g01165 370 PANTHER MRNA CAP GUANINE-N7 METHYLTRANSFERASE 1 367 - -
Cma01g01165 370 MobiDBLite consensus disorder prediction 1 27 - -
Cma01g01165 370 PIRSF ABD1 6 343 IPR016899 GO:0004482|GO:0006370
Cma01g01165 370 Pfam mRNA capping enzyme 32 341 IPR004971 -
Cma01g01165 370 PANTHER MRNA GUANINE-7- METHYLTRANSFERASE 1 367 IPR039753 GO:0004482
Cma01g01165 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 340 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01165 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] - csv:101217782 717.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01165 Cma-Chr1:8486853 Cma18g00929 Cma-Chr18:7962624 4.70E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g391 . . . . . . . . . . Cma01g01165 . . . . . Cpe02g00737 Bhi09g01965 Tan01g4483 . . Hepe01g1328 . . . . . . . . . . Cone9ag0116 . . Lsi04g01258 . Chy04g01032 . . . . . Bpe11g00516 . . Bma14g00368 . Cmo01g01220 . . . . Car16g00578 . . . . . . . . . Cla05g01557 Cam05g1664 Cec05g1669 Cco05g1709 Clacu05g1659 Cmu05g1552 Cre05g1664 . . . Cme04g00774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004967 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01165 Cma_Chr01 FPKM 16.056376 14.839986 13.346615 13.281078 12.047742 12.388899 11.646385 12.93695 12.813072 13.319497