Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01169 ATGGAGCTTCCATTATACGACTTATCGACAATATCACATTCCACAGACAATTTCTCAAACTCCAACAAGCTTGGAGAAGGCGGTTTTGGTGCAGTCTTCTGGGGTAGGCTTCCAAACGGACAAGAAATTGCAGTAAAAAGGCTGTCCAGCCATTCAAGACAGGGCATGGATGAGTTCATGAATGAAGTAAAACTTATAGCCAAACTTCAGCACAGAAACCTTGTAAAGCTTCTGGGTTGCTGCATTCAAGGGGAAGAAAAGATGTTGGTTTATGAATACATGCCTAATAACAGCTTGGACTCCTTCATATTTGATTTGGCGGGAAGGAAGCTTTTAGATTGGTCGAAGCGATTCAATATCATATGTGGAATAGCGAGAGGGATTCTTTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATCTCAAACCGAGTAATATCTTGCTTGATGTTGATATGATCCCGAAAATCTCAGATTTTGGAATGGCTAGGACTTTTGGTGGCGATCAGATCGAAGGGAACACTAAGAGAGTAGTTGGAACATACGGGTATATGGCACCGGAATACGCTATCAACGGACAATTTTCTATCAAGTCTGATGTATTCAGTTTTGGGATTTTACTATTGGAGATTATAAGTGGAGAGAAAAATAAGGGGTTTCGTCGTCCAAATCACGCCCTCAATCTTATTGGTCATGTATGGAGATTATGGAAGGAAGGAAGACCATTAGAGTTTATTGATACATCCATTACAGACTCGTACGCTCCATCTGAAGTATTGCGGTGCATCCATGTTAGTCTTTTGTGCTTGCAAAAACATCCCGAGGATAGACCAACTATGTCAAATGTGGTTCTAATGCTAAATAGTGATGGTGCGTTGGTGCAACCAAAACAACCTGGATTATACGTCGAAGGAGACTCACTTGAAGTTCATTCTTTTTCAAACAAAAATGAATTTCTTACTACCAATGAGTTAACTATTACCCACTTGGAGGTGAGATAA 1008 39.98 MELPLYDLSTISHSTDNFSNSNKLGEGGFGAVFWGRLPNGQEIAVKRLSSHSRQGMDEFMNEVKLIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNNSLDSFIFDLAGRKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKPSNILLDVDMIPKISDFGMARTFGGDQIEGNTKRVVGTYGYMAPEYAINGQFSIKSDVFSFGILLLEIISGEKNKGFRRPNHALNLIGHVWRLWKEGRPLEFIDTSITDSYAPSEVLRCIHVSLLCLQKHPEDRPTMSNVVLMLNSDGALVQPKQPGLYVEGDSLEVHSFSNKNEFLTTNELTITHLEVR 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8503318 8504860 - CmaCh01G011690.1 Cma01g01169 286862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01169 335 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Cma01g01169 335 ProSitePatterns Protein kinases ATP-binding region signature. 24 46 IPR017441 GO:0005524
Cma01g01169 335 SUPERFAMILY Protein kinase-like (PK-like) 4 289 IPR011009 -
Cma01g01169 335 ProSiteProfiles Protein kinase domain profile. 18 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01169 335 Gene3D Transferase(Phosphotransferase) domain 1 94 298 - -
Cma01g01169 335 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 4 326 - -
Cma01g01169 335 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 326 - -
Cma01g01169 335 Pfam Protein tyrosine and serine/threonine kinase 21 287 IPR001245 GO:0004672|GO:0006468
Cma01g01169 335 SMART serkin_6 18 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01169 335 CDD STKc_IRAK 24 290 - -
Cma01g01169 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Cma01g01169 335 PIRSF ILK 9 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01169 Cma-Chr1:8503318 Cma13g00696 Cma-Chr13:6334286 2.36E-138 dispersed
Cma01g01169 Cma-Chr1:8503318 Cma01g01171 Cma-Chr1:8511407 0 proximal
Cma01g01169 Cma-Chr1:8503318 Cma13g00689 Cma-Chr13:6299756 5.97E-141 wgd
Cma01g01169 Cma-Chr1:8503318 Cma16g00815 Cma-Chr16:4512975 7.73E-152 wgd
Cma01g01169 Cma-Chr1:8503318 Cma18g00332 Cma-Chr18:1779036 4.36E-145 wgd
Cma01g01169 Cma-Chr1:8503318 Cma19g00948 Cma-Chr19:8421147 2.82E-131 wgd
Cma01g01169 Cma-Chr1:8503318 Cma20g00649 Cma-Chr20:3000088 4.26E-134 wgd
Cma01g01169 Cma-Chr1:8503318 Cma03g00504 Cma-Chr3:4936160 2.52E-136 wgd
Cma01g01169 Cma-Chr1:8503318 Cma07g00288 Cma-Chr7:1281330 1.80E-133 wgd
Cma01g01169 Cma-Chr1:8503318 Cma09g00906 Cma-Chr9:4507821 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68277 PF07714 PK_Tyr_Ser-Thr 4.00E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01169 - - csv:101216184 561.607