Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01171 ATGGTAAATCTCTCTCTATTTCTGTTTCCGTTTGTTTTTCTCTTCTTTCCGCCGTCTCTGGCGGTTGATTTTTTAACCCCCTCTCAAAACCTCACCAACCCCGCCACTTTCGTCTCGGAAAAAGGGTTTTCCGAGCAAACCCCAAGAAATTTCACGAACCCATTTTTCGGAATCTGGCACAACAACCTCATCCCGATTCGCCGAATCGATTACCCAACGGACCCATTACTCCCTAGAAACGGAATCCACCGTCGATTATCCGCCGGAAAAACCCCCGACGACCTAGAACCGGCGATGTGGAAGGGCTCGAAGGAGCTCATGAGAAGCGAGGCTTTACTCCAGTCGGTACCAGGGGATTACTGCGACACGTACGGTCTCTGCGGCGCATTTGGGAGCTGCGACATCGAGCAAATGCCGGCGTGCCAGTGCTTAAAAGGGTTTCATCCAAAAGTGCAGGAGAAATGGAATTTGATGGATTACACAGATGGGTGTGTCAGAAATCGGCCATTGAATTGCTCTACTGATATAATCGGGTTCGCAAAGTTGCCTGGGCTCAAACTTCCAGACATGAACATGTCGTGGGTGAATGAGAGTATAAGCTTGAGTGAGTGCAGGGACAAGTGTTCAAGGAACTGTTCTTGTGTAGCGTTTGCAAACATAGTGGCTAGTGGCTCAGGGAGTGGCTGTGCCATTTGGGTTGGGGATCTTGTTGATATCAAAGTGGTTCGAGGTGGAGGCCAGGATTTGTATATTAGAATGCTGGCTTCTGAATTGGAGACGACGAAGAAGAAGAGCTTGGTTGTTGTCGGCATTATCGTCGTCGCAGCCGTTGTCGTGGTTGCTGGTTTGGTTCTTGTTGGGTTTTACATTAGGAGGAGGAGGAGAAGAAGCCATGACAGTAAGGATCTAGAAGTGCAAGAACAAGACTTGGAGCTTCCATTACTTGACTTACTGACAATATCTACTGCCACAGACAATTTCTCAGCCTCCAATAAACTTGGAGAAGGTGGTTTCGGCGCGGTTTTTCGGGGTAGACTTACAACTGGACAGGAAATTGCAGTAAAGAGGCTTGCTAGCTATTCGAGACAAGGGATGGATGAATTCAAAAACGAAGTGATACTCATTGCTAAACTTCAACATCGAAATCTCGTGAAGCTTTTGGGTTGTTGCATCCAAGGGGAGGAAAAGATGTTGATTTACGAGTACATGCCTAATAAGAGTTTGGACTTCTTCATATTTGACCCAGTTCGAAGAAAGCTTTTAGATTGGTCTGAAAGATTCAATATCATATGCGGAGTAGCTAGAGGGCTTCTTTATCTTCATCAAGATTCGAGGTTGAGGATTATACATAGGGATTTAAAAGCAAGTAATGTCTTGCTTGATGTTGATATGAATCCAAAAATCTCGGATTTTGGAATGGCTAAGACGTTTGGAGGGGATCAAACAGAAGGAAATACGAGGAGAGTTGTTGGAACGTATGGGTATATGGCACCAGAATACGCCATTGATGGACAATTCTCCGTCAAGTCTGACGTCTTTAGTTTTGGTATTTTGTTGTTGGAGATCATATGTGGAGAGAAGAACCGAGGTTTTTATCGTCCCAATCATGCTCTCAACCTTATTGGACATGCATGGAAGTTATGGAATGAAGGAAAACCGTTAGAATTGATTGATGCGACCATTGGAGACTCTTATTCTTTATCTGAAGTGGTTCGATGCATCCATGTTAGCCTTTTGTGCTTACAACAACAACCCGAGGATAGACCAACTATGTCGAATGTGGTTCTAATGCTAAGTAGTGAGAGCGTCTTAGCACAACCAAAACAGCCGGGATTCTACATGGAAAGAGATTCTCTTAAAGCAGATTCTATTTCGGGCAAGAATGAATGTTCAACTACCAATGAGTTAACGATTTCCCTAATGGAAGCTAGATAG 1935 44.6 MVNLSLFLFPFVFLFFPPSLAVDFLTPSQNLTNPATFVSEKGFSEQTPRNFTNPFFGIWHNNLIPIRRIDYPTDPLLPRNGIHRRLSAGKTPDDLEPAMWKGSKELMRSEALLQSVPGDYCDTYGLCGAFGSCDIEQMPACQCLKGFHPKVQEKWNLMDYTDGCVRNRPLNCSTDIIGFAKLPGLKLPDMNMSWVNESISLSECRDKCSRNCSCVAFANIVASGSGSGCAIWVGDLVDIKVVRGGGQDLYIRMLASELETTKKKSLVVVGIIVVAAVVVVAGLVLVGFYIRRRRRRSHDSKDLEVQEQDLELPLLDLLTISTATDNFSASNKLGEGGFGAVFRGRLTTGQEIAVKRLASYSRQGMDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDFFIFDPVRRKLLDWSERFNIICGVARGLLYLHQDSRLRIIHRDLKASNVLLDVDMNPKISDFGMAKTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSVKSDVFSFGILLLEIICGEKNRGFYRPNHALNLIGHAWKLWNEGKPLELIDATIGDSYSLSEVVRCIHVSLLCLQQQPEDRPTMSNVVLMLSSESVLAQPKQPGFYMERDSLKADSISGKNECSTTNELTISLMEAR 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8511407 8514414 - CmaCh01G011710.1 Cma01g01171 286864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01171 644 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Cma01g01171 644 Gene3D Transferase(Phosphotransferase) domain 1 403 610 - -
Cma01g01171 644 ProSiteProfiles Protein kinase domain profile. 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01171 644 SUPERFAMILY Protein kinase-like (PK-like) 310 598 IPR011009 -
Cma01g01171 644 Pfam S-locus glycoprotein domain 111 150 IPR000858 GO:0048544
Cma01g01171 644 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 113 637 - -
Cma01g01171 644 Pfam Protein tyrosine and serine/threonine kinase 329 596 IPR001245 GO:0004672|GO:0006468
Cma01g01171 644 SMART ntp_6 174 253 IPR003609 -
Cma01g01171 644 ProSiteProfiles PAN/Apple domain profile. 172 254 IPR003609 -
Cma01g01171 644 SMART serkin_6 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01171 644 Gene3D Phosphorylase Kinase; domain 1 287 402 - -
Cma01g01171 644 Pfam PAN-like domain 178 239 IPR003609 -
Cma01g01171 644 Pfam Domain of unknown function (DUF3403) 599 644 IPR021820 GO:0004674
Cma01g01171 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Cma01g01171 644 CDD PAN_AP_plant 169 252 - -
Cma01g01171 644 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 113 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01171 Cma-Chr1:8511407 Cma09g00906 Cma-Chr9:4507821 4.37E-07 dispersed
Cma20g00649 Cma-Chr20:3000088 Cma01g01171 Cma-Chr1:8511407 7.32E-17 dispersed
Cma01g01169 Cma-Chr1:8503318 Cma01g01171 Cma-Chr1:8511407 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68278 PF07714 PK_Tyr_Ser-Thr 9.20E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01171 - - cmos:111446489 1187.94