Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01172 ATGATGAAGTGCGAGCTGTGTGGGCAGCTAGCGAGGACTTTCTGTGAGTCCGATCGGGCGAACCTATGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAGCATTCTAGGAGTCTTCTATGTCGTGCGTGTCAGTCGCCGACTCCATGGACGGCATCTGGTCGGAAGCTTACGCCTACGGTTTCTGTGTGTGAGGGATGTGTTGAAGTCCATGGTGGTAAATGCGAGCAAGGTGGATATCAAGAGCGCCGTAGAGATAACGAGGAGGAAGTTAATGATGGGGATGATTTTGACGATGGTGAAGGTTTCGGGAGTTATGAGGGAGGTGATAGTGAGGATGATGATGAGGATGACGATGAGGAGGAGGCGGTGGAGGAAGAAGAAGAGGATGAAGACGGAGAAAACCAGGTGGTTCCGTGGTCTTGTGCGTCTTCTTCGACGCCACCACCACCACCGACAGTGACTTCTAGCAGCGAGGGCGAGATGTCAGCTTGCGCTGGTGGCGTATCGAAGCGGAGGAAAGAGTACGACGTCGATCTCGATTCCGAGGACGAATTCGAGTGTTCTTCTGCTCAACAAGGAACCAGGCCTTCTTACAATGACGAAGCGACTTCCTCTACTTCCCACAGGCCACTGAAGCAAGCAAGAGTTACAGGACCGACCCAATCAGCCAGCATCATCCCCGATGATGAAGCTCGTAAAGCAGATTTAAAATCCACGGCTGTCATTAGATCGATCCAGAGTCTCCAGAATCGTCTGCCCACCGGTATCAACGATGCTTCCAAACTGATTTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA 846 51.06 MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKLTPTVSVCEGCVEVHGGKCEQGGYQERRRDNEEEVNDGDDFDDGEGFGSYEGGDSEDDDEDDDEEEAVEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRKEYDVDLDSEDEFECSSAQQGTRPSYNDEATSSTSHRPLKQARVTGPTQSASIIPDDEARKADLKSTAVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8518748 8520133 + CmaCh01G011720.1 Cma01g01172 286865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01172 281 MobiDBLite consensus disorder prediction 96 140 - -
Cma01g01172 281 MobiDBLite consensus disorder prediction 83 234 - -
Cma01g01172 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 230 - -
Cma01g01172 281 PANTHER OS08G0178800 PROTEIN 1 230 - -
Cma01g01172 281 CDD Bbox1_BBX-like 3 45 - -
Cma01g01172 281 SMART bboxneu5 1 45 IPR000315 GO:0008270
Cma01g01172 281 MobiDBLite consensus disorder prediction 192 230 - -
Cma01g01172 281 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Cma01g01172 281 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01172 - - - bhj:120086748 374.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01172 Cma-Chr1:8518748 Cma11g01841 Cma-Chr11:12284810 1.05E-11 dispersed
Cma01g01172 Cma-Chr1:8518748 Cma18g00336 Cma-Chr18:1799650 2.13E-32 wgd
Cma01g01172 Cma-Chr1:8518748 Cma03g00503 Cma-Chr3:4933609 8.38E-25 wgd
Cma01g01172 Cma-Chr1:8518748 Cma09g00905 Cma-Chr9:4498369 6.25E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g325 . . . . . . . . . . Cma01g01172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34318 PF00643 zf-B_box 3.20E-05 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01172 Cma_Chr01 FPKM 17.428293 15.492356 49.343048 50.399422 11.049291 13.362186 12.027027 63.047421 63.949059 59.519695