Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g01182 | ATGATGTTATCGCCATCGCCTTCGACGATAGCTCGGAGTTCACTCGAGGAAATGCTCGATTCGCTTCGACGAAGGGATGAGATTGATAAGCCTAAAGACGCGCCCCCTGCATTGCCGTCTCGGCCCACTTCTAAGGCTCGGACTCCCCCCGTGGGACGGGCTTTGCCGGTCAATTTCAGGGTTAATGTTGATGGCTCCTCTGGCTGCTCTATTAATGGCTTCAATGGAAGGGAAGATGTAATGAGAAAGGAGAATGGTTTGGGTAACTTTGCATTCAAGAGATTGAATGGAGATCAAGATGAGGAATCGCCTTACATGTTAGCTTCTGAAAATGAAAATGGAGATCGAGTGAATGGTTCGAATCTTCGTGGGTCTTATTGGGAGGACAATATCGGTTATTTTCTTCAGAAGAAACTCCATGTTTGGTGTCAACTTCCGAATGGACAATGGGAGTTAGGAACCATACAGTCGAGCACTGGGGCGGAGGCATCTGTCATGCTTTCGAACAAAAAGGTTATTAAAATTTCGACCGTAGATCTTTTACCTGCCAATCCAGATATCGTCGAGGGGGTTGATGATCTTGTACAGCTTGGTTTTCTGAACGAGCCTTCGGTTCTTCACAGTCTACATCGAAGATTTTCTCAGGATAAGATTTATAGTAACGCAGGGTCGGTTTTGATAGCAGTCAACCCCTTGAAAGACATTAAACAGTATGGAAAGGAATTTATTGAAGCCTACAGACAGAGAGTCATAAACAACCCTCATGTTTATGCTACAACAGATGCAGCTTATTCTGGGATGTTAAGAGATGAAGTTAATCAATCCATTATCATCAGCGGCGAAAGTGGAGCGGGAAAAACGGAGACAGCAAAAGCTGTGCTTGAATACTTGACTTCTCTCGGTGGTGTCAGTGGCATAGATGACAGAATTTCTCGAGCAAATGTTATACTCGAAGCATTTGGGAATGCAAAAACCTCCAGAAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAGACTTGTAAGAAAACTATTGTGACAGTGATATATTATAATTTATCTTTCAGCTTACTTTTATTAACTTTCTGTTACCGTTCGTGCATATCGCATGTCGACCCACCTGCCAAATTTCAAATAGTTCTGTTGGATAAGTCGAGAGTCGTTCACCTGGTTAATGGCGAAAGATCATTCCACGTCTTCTATCAACTTTGTGCTGGATTACCATCTAGACTTAAAGAGAAATTTAATATCAGAGCGGCCAGTGAGTACAGTTACCTCAATCACAGTGAATGCCTGGTGATTGGTGGTGTCGATGATGCACGGAAATTTAACATTCTTGTGGAAGCCTTTGACACACTTCAATTCACAAAGGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCAGTTTTGTGGATAGGGAACATTACGTTTCAAATAATTGATAGCGAAAATAATCATGTAGAGGTCATAGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGCTGCAGTTTTAATGAGCTTAAGTTAGTTTTATCAACCCACAAAGAGCAATCTGGCAAGGATAGCATTGCTAAAAAATCAACATTACAACAGGCTACGGATGCAAGAGATTCATTAGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCGCTTCAGCCAGGAAGGGAGTATTCTGGAAGATCCATTAATATCCTTGACATCTATGGCTTTGAGTCATTTAAGAAGAACGGCTTCGAACAATTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTATTCGGCATCTTTTCAAACTTCAGCAGGAGGACTACGAATTTAACGGGGTCGATGGTATGAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAGCCTCTAGGAGTTCTCGCCTTGATGGACGAAGAGTTAAGTTTTCCGAAGGCTACAGATCTGACATTTGCTAATAAACTTAAGCAGCACTTTAAATCTCATCCCCGCTTTAAAGGGGAAAGAGGTAGGGCTTTCGGCGTTCGACATTACGCTGGAGAGGTTGTATATGATACAAATGGGTTTTTGGAGAAGAATAGAGATCTCCTGCATTCAGACTCCATCCAACTCTTTTCATCATGTGCTTCCAAGCTACTGAAAATATTTGCCTCCAAAATGGTTAACCATTCCTACAAACCAGCAGGTTCGATAAGCTCTACAAAGGGCGTAGAATCCCGTGAGCCAGGTGTTGGTACCAAGTACAAGGCTCTACTATTTGAGCTATTTCATAAATTGGAGTGCACGAGCCATCACTTCATTTGTTGCATGAGACCGAACCGAAGTCAAGTTTGTGGCTTATTTGAGGAGGACCTTGTCCGACAACAACTTAGGTACTGTGGCATTTTGGAGGTTATTAGGATTTCAAGGTCTGGATATCCTATCAGGATAACGCATAAAGAATTTGCTGGAAGGTATGAATTCTTCCTTGAAGAATCGGGTGTTGCTCGAGATCCGTTGAGTATATCAATTGCTGTTCTGCAGCATTTTAATGTCCACCCCGAGATGTACCATGTTGGTTATACGAAACTATTATTCCGAACTGGGCAGATTCGGGCCGCCTTGGAGGAAAGGAGGACGCAGGCTATGCAAAGCATCCTCGGGGTTCAAAAACACTTCCGTGGTTGCCATTCTCGTGGTCACTTCCATGAACTTAAGCATGCCGCCACGATCTTACAGTCATTTATTCGCGGCGAAAGTTCGAGAAGGAGAAGTACCGGTAAGGTGAAGAGGTTCTCATTCACTGTGCGCGCTTTCAATGTTCCTTCAAAGGTGTATGAACAGCAGGCAATCATTCGATTACAATCCGTAATACGTGGTTCGTTGGTTCGAAATCATTTTATGGGCAAGAGTGATTTGAATAGGTTTGAAAACCAACCAAACAGGGGCAGGAGACTTTCAGAGGATCATGCGTTGCCTGCGACACTGACCGGCCTTCAAAAGAGGGTCCTTGAAGCGGAAGCAACCATAGGGAAAAAGGAAGAGGAAAATGCTGCATTGCGGGACCAAGTAAAGCAATTTGAGGCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAACGAGTCTTGCTGCTGCTAAAAAGAGTCTTGCTGCTGAAAATGTGGCCGGAAGGGCAGGTAACTCACCACCTCACTATTACGATTCTGAAGATACGACGTCCATGGAATCTCGAACTCCCCGTGAAACTGGAGCAGGCCGAGAAATGAATGGTACATCATTTGCTGTGAACAATCTCGTAAAGGAGTTTGAACAGCAAAAGAATGCATTCGATGATGATGCCAAAGGTTTGGCCGAAGCAAAATCAGGTCAGGGACAAACAGGAGGGGCTAACACGAATCCGGACGAAGAATACCGTAAAATTAAAGTCCGGTTCGAAACATGGAAAAAGGAGTACAAGGCAAAACTACGTGAAAATAAACCTAAGGTTCATAAACATGGACCTTTCGAGGCTGATATAATTCGTCGAAAATGGTGGGGGAAGTTGCGGTTAAGATCGTCATAG | 3666 | 43.18 | MMLSPSPSTIARSSLEEMLDSLRRRDEIDKPKDAPPALPSRPTSKARTPPVGRALPVNFRVNVDGSSGCSINGFNGREDVMRKENGLGNFAFKRLNGDQDEESPYMLASENENGDRVNGSNLRGSYWEDNIGYFLQKKLHVWCQLPNGQWELGTIQSSTGAEASVMLSNKKVIKISTVDLLPANPDIVEGVDDLVQLGFLNEPSVLHSLHRRFSQDKIYSNAGSVLIAVNPLKDIKQYGKEFIEAYRQRVINNPHVYATTDAAYSGMLRDEVNQSIIISGESGAGKTETAKAVLEYLTSLGGVSGIDDRISRANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTCKKTIVTVIYYNLSFSLLLLTFCYRSCISHVDPPAKFQIVLLDKSRVVHLVNGERSFHVFYQLCAGLPSRLKEKFNIRAASEYSYLNHSECLVIGGVDDARKFNILVEAFDTLQFTKEDQEHAFGLLAAVLWIGNITFQIIDSENNHVEVIANEAVANAAKLMGCSFNELKLVLSTHKEQSGKDSIAKKSTLQQATDARDSLAKFIYASLFDWLVEQINKSLQPGREYSGRSINILDIYGFESFKKNGFEQFCINYANERLQQHFIRHLFKLQQEDYEFNGVDGMKVNFEDNQECLNLIEKKPLGVLALMDEELSFPKATDLTFANKLKQHFKSHPRFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCASKLLKIFASKMVNHSYKPAGSISSTKGVESREPGVGTKYKALLFELFHKLECTSHHFICCMRPNRSQVCGLFEEDLVRQQLRYCGILEVIRISRSGYPIRITHKEFAGRYEFFLEESGVARDPLSISIAVLQHFNVHPEMYHVGYTKLLFRTGQIRAALEERRTQAMQSILGVQKHFRGCHSRGHFHELKHAATILQSFIRGESSRRRSTGKVKRFSFTVRAFNVPSKVYEQQAIIRLQSVIRGSLVRNHFMGKSDLNRFENQPNRGRRLSEDHALPATLTGLQKRVLEAEATIGKKEEENAALRDQVKQFEARRLEYEAKMKSMEDMWQKQMASLQTSLAAAKKSLAAENVAGRAGNSPPHYYDSEDTTSMESRTPRETGAGREMNGTSFAVNNLVKEFEQQKNAFDDDAKGLAEAKSGQGQTGGANTNPDEEYRKIKVRFETWKKEYKAKLRENKPKVHKHGPFEADIIRRKWWGKLRLRSS | 1221 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 8561028 | 8570773 | - | CmaCh01G011820.1 | Cma01g01182 | 286875 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g01182 | 1221 | MobiDBLite | consensus disorder prediction | 1088 | 1123 | - | - | |
| Cma01g01182 | 1221 | PANTHER | MYOSIN-2 ISOFORM X1 | 390 | 1218 | - | - | |
| Cma01g01182 | 1221 | Pfam | Myosin head (motor domain) | 191 | 355 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | Pfam | Myosin head (motor domain) | 390 | 888 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | CDD | MYSc_Myo8 | 203 | 888 | IPR036022 | - | |
| Cma01g01182 | 1221 | SMART | MYSc_2a | 183 | 902 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | MobiDBLite | consensus disorder prediction | 17 | 34 | - | - | |
| Cma01g01182 | 1221 | Gene3D | - | 597 | 790 | - | - | |
| Cma01g01182 | 1221 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 165 | 945 | IPR027417 | - | |
| Cma01g01182 | 1221 | Gene3D | - | 410 | 469 | - | - | |
| Cma01g01182 | 1221 | ProSiteProfiles | Myosin motor domain profile. | 189 | 901 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | Coils | Coil | 1017 | 1065 | - | - | |
| Cma01g01182 | 1221 | Gene3D | Kinesin motor domain | 390 | 829 | IPR036961 | - | |
| Cma01g01182 | 1221 | PANTHER | MYOSIN | 120 | 356 | - | - | |
| Cma01g01182 | 1221 | MobiDBLite | consensus disorder prediction | 1153 | 1173 | - | - | |
| Cma01g01182 | 1221 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Cma01g01182 | 1221 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 471 | 768 | - | - | |
| Cma01g01182 | 1221 | ProSiteProfiles | IQ motif profile. | 926 | 954 | IPR000048 | GO:0005515 | |
| Cma01g01182 | 1221 | Pfam | IQ calmodulin-binding motif | 928 | 945 | IPR000048 | GO:0005515 | |
| Cma01g01182 | 1221 | Pfam | IQ calmodulin-binding motif | 970 | 988 | IPR000048 | GO:0005515 | |
| Cma01g01182 | 1221 | ProSiteProfiles | IQ motif profile. | 968 | 996 | IPR000048 | GO:0005515 | |
| Cma01g01182 | 1221 | SMART | iq_5 | 925 | 947 | IPR000048 | GO:0005515 | |
| Cma01g01182 | 1221 | SMART | iq_5 | 902 | 924 | IPR000048 | GO:0005515 | |
| Cma01g01182 | 1221 | SMART | iq_5 | 967 | 989 | IPR000048 | GO:0005515 | |
| Cma01g01182 | 1221 | Gene3D | - | 833 | 902 | - | - | |
| Cma01g01182 | 1221 | Gene3D | Kinesin motor domain | 184 | 367 | IPR036961 | - | |
| Cma01g01182 | 1221 | PRINTS | Myosin heavy chain signature | 273 | 298 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | PRINTS | Myosin heavy chain signature | 640 | 668 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | PRINTS | Myosin heavy chain signature | 315 | 342 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | PRINTS | Myosin heavy chain signature | 587 | 615 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | PRINTS | Myosin heavy chain signature | 219 | 238 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma01g01182 | 1221 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Cma01g01182 | 1221 | Gene3D | - | 903 | 952 | - | - | |
| Cma01g01182 | 1221 | PANTHER | MYOSIN | 390 | 1218 | - | - | |
| Cma01g01182 | 1221 | PANTHER | MYOSIN-2 ISOFORM X1 | 120 | 356 | - | - | |
| Cma01g01182 | 1221 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 136 | 185 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01182 | Cma-Chr1:8561028 | Cma18g00811 | Cma-Chr18:7087234 | 0 | dispersed | |
| Cma01g01182 | Cma-Chr1:8561028 | Cma09g00895 | Cma-Chr9:4423710 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g01182 | K10357 | - | csv:101210624 | 1787.7 |