Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01189 ATGGTGAAAATTAAGCTTGTTTCCTTGTCAATGGTGCTGTCTATCGCTTTGTTCTTGTGTATAGGATCTTATGCCTCCTTTACTCCCGTTGATAACTATTTGATAGCGTGTGGTTCTTCACAAAACATCACTTTCCAAGGTAGAACTTTCGTTCCTGATAATCAGCATTCATTGCTCTCCCTTGATGGTGGAAGCTCTGTTGTTAGTTCAAAAGCTACTTCTGTTCCGTCTCCAATTTATCAATCTGCTCGGGTTTTCACCAGCATTGCGTCGTATAAATTTGAAATCAAGGAAGAGGGTCGGCATTGGGTTCGGTTATATTTTTATCCTATTCCGAAGTCGGAGCGGAATTTAGCGTCTTCATCGATAACTGTTGTTACTGATAAGTTTGTGTTGTTGAACAAATTTTCTTTCAAGAACTATAATGGTTCTTTTATGTTCAAGGAGTATGCTATCAATGTCACTTCGGATTCCTTGACACTTACTTTTATCCCGTCTAATGGTTCGGTTTCGTTTGTTAATGCGATTGAAGTTGTCTCGGTGCCTGATGAGCTGCTCCCTGACCAAGCATTGGCTTTGAATCCGTCTTCTCCTTTCAGTGGCATCTCGAAACTTGCTCTTGAAACTGTTTATCGACTGAACGTTGGGGGTCCTTTACTCACTTCGCAAAATGATACACTTGGAAGAACTTGGGAGAATGATATGAATTACCTCCATGTCAACAGTTCTGCTGTGAATATCTCTGCTAACCCGGGGAGCATAAAATATCATCCTGGTGTTACACCGGAGACTGCACCGAATTGGGTTTATGCTACTGCCGACGCCATGGGTGACCCGAATGTACCGAACGTGAACTTCAACTTGACTTGGGTTTTTTCTGTTGAGCCAAATTTTCAGTACTTCGTCCGAGTGCATTTTTGTGATATAATGAGCAAGGCTCTCAATAATCTGGTATTCAATCTTTACATCAATTCTGATAATGCGCTGGGAAGCTTTGATCTGTCGACGATAACCGGTGACTTGGGTGTTCCTTATTACAAAGACTTCATTGCCAACTCAGCAGGTTCAGCTACTTTGACCGTTAGTGTCGGTCCAGATCAAATGGCAGACCTCACCAATGCAACCATGAATGGCTTGGAGATTATGAAGTTAAGCAATCAAGATGGGAGCTTGGATGGAACTTCGTCGGTCGAAAGTCTTTTCCCAAATGCGCCCTCGAAGAAGAACAATATAGCAATCATTGTTGGTCCTGTCTTGGGAGCTGTAGTGGGCCTAACTTTGCTCGTCTTGTGTTATTGCCGCTTCGTAGCTCGCAGATCAAAGACGACTCAACCAGCACACCCATGGCTGCCTTTGCCTTTGTATGGAAACTCTCAAACCATGACAAAAGGATCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCATATCTTTGGCTTCCTCCAGCCTTGGCAGATTGTTCACATTTCAGGAAATTCTTGATGCTACCAACAAGTTTGATGAAAACCTGCTCCTTGGAGTTGGTGGTTTTGGTCGGGTTTACAAGGGAACACTTGAAGATGGTCTGAAAGTTGCTGTCAAAAGAGGTAACCCCAGATCGGAACAAGGTCTTGCCGAGTTTCGAACTGAAATAGAAATGTTATCAAAGCTCCGACATCGTCACTTGGTGTCTCTTATTGGCTATTGTGACGAAAGATCAGAAATGATTCTTGTCTATGAATATATGGCAAATGGACCTTTACGGAGTCATTTGTATGGAACGAATCTACCGCCATTGTCATGGAAGCAACGACTTGATATTTGCATTGGTGCTGCGAGAGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATAATACACCGGGATGTTAAAACGACAAACATTCTCTTGGACGAGAATTTCGTTGCGAAAGTTGCAGACTTTGGTCTCTCAAAAACTGGGCCATCTCTGGATCAGACTCATGTTAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTCGATCCCGAGTACTTCAGGCGACAACAGCTCACTGAGAAGTCAGACGTATATTCATTTGGGGTCGTGCTAATGGAAGTTCTCTGCACAAGGCCAGCGCTTAACCCTGTTCTGCCCCGAGAACAAGTCAATATAGCCGAATGGGCAATGACCTGGCAGAAGAAGGGCATGCTAGATCATATCATGGACCCCAATCTGGTTGGTAAAGTTAACCCAGCATCGCTTAAGAAGTTCGGTGAAACAGCTGAGAAGTGCCTGGCTGAGTATGGGGTTGACAGACCTTCTATGGGAGACGTCCTATGGAATCTGGAATACGCTCTTCAGCTCGAGGAAACCTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAACCACATCCCTACTATCCAATTAACCCCTCTCGAGCCATTTGATAACAGTGTAAGCATGATCGATGTAGGGAACTCCGGTACTGACGATGATGCTGAAGATGCTGCAACAAGTGCAGTATTTTCCCAGCTCATTAAATTCCATTCTCTCAATTCATTCGGATTGCTATATGGTTCTGCGGCGTCCGCGGATCGTTTCAAGATTAATTGGTACAGTAAACAGTCTACTCTTTACTTTTACATTCAGGCTGCTAGATATTGGCTGCCCCAAAACACTTTCTTGACAAAGATGAAGAGAAAGATACTACAGGAGTCACCCAAAAGTAGAGACACATTCACACGGCAGAAGACAACTAGCCAATATGAAGCAAAAGCTTCGTTATTCAATGTCGAGTATGGCTTGGTTCGGGTTATGATGACTTATTTTCTGCAAACTATGCCATTTCCGCTCGTGCTTCCTCCAGAGCAGTCTATGAAGCTGTATTGCTTTATCTTCAGGTCCTCTTTGTTAGACGGTTCGTCAGGGGAAAACGAACAGGCATTGCAATCAGCTGAGAGAAGCGACGAGGTCTTGTACTCCTTGTCACCTCCTACGACGGGCATTGCGACTCCGGGCTTAGCTGGGTTCTTAAAGTCAGGCTGGTAA 3018 44.17 MVKIKLVSLSMVLSIALFLCIGSYASFTPVDNYLIACGSSQNITFQGRTFVPDNQHSLLSLDGGSSVVSSKATSVPSPIYQSARVFTSIASYKFEIKEEGRHWVRLYFYPIPKSERNLASSSITVVTDKFVLLNKFSFKNYNGSFMFKEYAINVTSDSLTLTFIPSNGSVSFVNAIEVVSVPDELLPDQALALNPSSPFSGISKLALETVYRLNVGGPLLTSQNDTLGRTWENDMNYLHVNSSAVNISANPGSIKYHPGVTPETAPNWVYATADAMGDPNVPNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKALNNLVFNLYINSDNALGSFDLSTITGDLGVPYYKDFIANSAGSATLTVSVGPDQMADLTNATMNGLEIMKLSNQDGSLDGTSSVESLFPNAPSKKNNIAIIVGPVLGAVVGLTLLVLCYCRFVARRSKTTQPAHPWLPLPLYGNSQTMTKGSTTSQKSGTASFISLASSSLGRLFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGLKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTNLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDVGNSGTDDDAEDAATSAVFSQLIKFHSLNSFGLLYGSAASADRFKINWYSKQSTLYFYIQAARYWLPQNTFLTKMKRKILQESPKSRDTFTRQKTTSQYEAKASLFNVEYGLVRVMMTYFLQTMPFPLVLPPEQSMKLYCFIFRSSLLDGSSGENEQALQSAERSDEVLYSLSPPTTGIATPGLAGFLKSGW 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8611981 8616078 - CmaCh01G011890.1 Cma01g01189 286882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01189 1005 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Cma01g01189 1005 Pfam Malectin-like domain 35 383 IPR024788 -
Cma01g01189 1005 Gene3D Phosphorylase Kinase; domain 1 459 575 - -
Cma01g01189 1005 SUPERFAMILY Protein kinase-like (PK-like) 477 771 IPR011009 -
Cma01g01189 1005 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 834 - -
Cma01g01189 1005 CDD STKc_IRAK 506 771 - -
Cma01g01189 1005 SMART serkin_6 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01189 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Cma01g01189 1005 PANTHER OS07G0166700 PROTEIN 19 834 IPR045272 GO:0004714|GO:0006468
Cma01g01189 1005 Gene3D - 205 386 - -
Cma01g01189 1005 Gene3D - 32 181 - -
Cma01g01189 1005 ProSiteProfiles Protein kinase domain profile. 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01189 1005 Pfam Protein tyrosine and serine/threonine kinase 505 698 IPR001245 GO:0004672|GO:0006468
Cma01g01189 1005 Gene3D Transferase(Phosphotransferase) domain 1 576 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01189 Cma-Chr1:8611981 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma04g01222 Cma-Chr4:6235585 Cma01g01189 Cma-Chr1:8611981 0 dispersed
Cma03g00655 Cma-Chr3:5523528 Cma01g01189 Cma-Chr1:8611981 3.70E-74 transposed
Cma03g01452 Cma-Chr3:9096111 Cma01g01189 Cma-Chr1:8611981 0 transposed
Cma08g00624 Cma-Chr8:3504747 Cma01g01189 Cma-Chr1:8611981 0 transposed
Cma11g00125 Cma-Chr11:676663 Cma01g01189 Cma-Chr1:8611981 0 transposed
Cma17g00823 Cma-Chr17:6448674 Cma01g01189 Cma-Chr1:8611981 0 transposed
Cma01g01189 Cma-Chr1:8611981 Cma09g00890 Cma-Chr9:4385407 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68279 PF12819 Malectin_like 1.90E-38 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01189 - - csv:101215627 1517.29