Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01195 ATGTGCTACCTCCGTCGATTTCTGCTGGCACACATTCATTCTATTCGTGTTATCTTTTTCTTCTCTCTCTCTCTCTCTCTGTTTCAAACCCTCCATGTGGAAATTGCAGCACATAACGAGCGATTTACTCTTTCCATGGATCCTCGCACTCGTTTGAATCATGCTCTGTTTCAGCTCACTCCCACTAGAACCAGATGTGAATTGGTTATCTCAGCTAATGGTGGTGCTACTGAGAAACTGGCATCTGGGCTTCTTCAGCCATTTATCTCCCACCTCAAATGTGCTCGAGATCAGATTTCTAAAGGGGGTTACTCCATTACTCTTCGCCCAATTGCAGGATCAAACGCTTCTTGGTTCACTAAGGGCACCCTTCAGAGATTTGTGAGATTTGTAAGCACACCGGAGGTTCTTGAGAGATTTGTTACCATAGAAAAGGAGATTGTGCAGATCGAGAATTCCATGTCCGCAGATGCTGAAGAAAACGCAACGGTTGCTGATTGGAACTCAAAACGATCGAGCCCAATGCAGCGGGTGAAGGGCGATTCAGATGATATTAACGATGATGCTACATTGAAGGACAATCCCAAGATCCGTCTTCAACGTGTTTTAGAAACTCGAAAGGCTGTGCTACACAAAGATCAAGCAATGGCTTATGCTCGTGCTTCGGCTGCGGGATATGAGATGGATTATATTGAGGATCTTATAGCTTTTGCTGAGGCTTTTGGAGCTTCACGTTTGAGGGAAGCATGTATAAATTTTATGGACTTATGCAAGCGAAAGAACGAAGACAAGCTCTGGATAGACGAAATAGCAGCTATGCAGGCATTCTCTCAGCCAGCATTTTCGTACTCAGAAACTTCTGGTATCGTACTAGCTGGTGAAGAGAACGAATCTAACGTCAATGCTCATGTATCAAAATCTGATTCGTCAGCAAGTCAAGGAAGTTCAGAGAACAATCAAGATGGTAGCCTTCCGAAATCAGCACAAATGTCGATGAATGGGAAAGCTCAAGTGCCAACGACGTGGCCTAATCATCCTCAATATATGCAAAACTTTCAAGGTCCTTTATATCCTCCATATCAAGGATATCTTTTCCCCGGAATGCAGATGCCGCCACCATATTACCCAGGGAATATGCAGTGGCCATCAAATGCTGAGGACTTGAGTCTTGCTTCCGACCGAGAGCCTGGCGGTCATAGAAGTTCTAAATCTCGTAGGAGTAAGAAGAAACATTCACATAAGGAGAGAACTTCAGAACAAGAAGCAACTACAGAGTCTGGTGAATCCAGTGTCGACTGTGAATCAGATGACCAATCTGCAGATGATAAAAAGCAATACTCAACGGAAAAGATACGTAAGAAAAAGCATGGCAAGAAATCTTCAAGAACGGTCGTTATACGTAATATTAACTACATAACGTCAAAGAGGAATGGCGAAAAGGGTAGCCACTCAGAGGATGATTCATCCGACGAGGGTGAGTTTATTGATGGCGATTCCATCAAACAGCAGGTAGAGGAAGCTGTTGGGACGTTGGAGAGAAGACATAAGGCAACCAGTCGACACCAAAAGAAACAAAATGGCCATGACAATGCAGATGGCTTAAACGATTCTGCAGAACGGGTGACTAACGGGATATCGAACAATTCAGAGGGAGAAAAGATCAGTAGCCCATGGGATGCTTTCCAGAATCTTCTTATGAGCGAAAGGGAGCCGGAAAAGTCTCGTGAATTGCCCTCAGTTCAGGATCAAGACGGCCATGAGGGGAGGTCACCTATGCTAAACTTGGAATCAGAGAGAGCACCGAGACAACGTGAAGTTTCGTGCGATTCTTTCGTCGTGACAGACAGGAGTTCGGGTAATGAAGGGAGAACACATATTGAAAATTTTGAAGCTGGTGATGTTGCCAACCCCATTAATAGAAGGAGAGAAAGCACATATGAAGAGTTATTGTATTCACAAAGAGGTGGAGAATCAGGGAGCCATGTGCATTCCTCTGCGTCCGATTTCACCAATGTGTCGTCCAAAATGAAAACGCAAACAGAAGGCGATTGGTTTGTCAGCAATCCGACTAATAAATCAGAAAATCAGTGTCAAAACGTCGGTCCCAGAGTTTACGACACCGAGTTCTCTTCATCGGCTCAAGACCATTTCTATTCAGAGAAAAACAAGAAAGACGTGTTGGCTGATGACTCTTTCATGATTCAGCCTCGACCATTAGTAGATGACCAATCCGACTTTCAATCTAGACGAGACATAAGCATGGTGTCAGACATTGTTGGGGATGCCGAAAATGAGTATGTCAAACAAGAAACCTCAAGAGACGAAAAGCCTGCAACTCTTGGTGTCAGTGAACCGGATGACCTTTACATGATGCTTGATCGTGATATAGCTACAGAGCACACGGTAGCATCTTGGAGCCCAGAAATGGACTATGAAAATAATTTTTCAACCATAGCGAAGAGTAAGCACAGTGATATCGAAGCTGATGACGGTGGGGATAAGAGTAATAAAAATAAAGAATCTGGGGGCAAAGTTCCAAGTAAAGAAGCCAGATCCAAATCCTTGGGAGGACATCTAGCTAAGGGAAAATATGATGTTCAATCACGAACACGAAAACCACTTTCTGGAGGCAGAACTACCGTCCCGAAGAGCAAATTCGAAAAGGAAGAAGAGACGAGAAAGAGAATGGAAGAGTTGGCGATTCAACGCCAGAAAAGAATTGCTGAAAGGAGTTCTAAGCCTGGTGTAACCAAGATTGAGAAGCAAAAAAGCCAATCCCTGGTCCAAGAAGCCAAGAAGTCACCTAAGCCTGTACTTAGGAGTTCAACGATAGATCGACTTGCAATGGCTCGTACACCTCAGAAGGTATCTGCAACTCAATCACCATCGAGTCAACCAAAAAAGCCGACCTCGAGAGCGAGTGGCATTACCTCATCAGAAAAGTTCCCTAAATCTGACAGTAAGAAACTTATCAACCTTCCGATTTAA 2988 44.08 MCYLRRFLLAHIHSIRVIFFFSLSLSLFQTLHVEIAAHNERFTLSMDPRTRLNHALFQLTPTRTRCELVISANGGATEKLASGLLQPFISHLKCARDQISKGGYSITLRPIAGSNASWFTKGTLQRFVRFVSTPEVLERFVTIEKEIVQIENSMSADAEENATVADWNSKRSSPMQRVKGDSDDINDDATLKDNPKIRLQRVLETRKAVLHKDQAMAYARASAAGYEMDYIEDLIAFAEAFGASRLREACINFMDLCKRKNEDKLWIDEIAAMQAFSQPAFSYSETSGIVLAGEENESNVNAHVSKSDSSASQGSSENNQDGSLPKSAQMSMNGKAQVPTTWPNHPQYMQNFQGPLYPPYQGYLFPGMQMPPPYYPGNMQWPSNAEDLSLASDREPGGHRSSKSRRSKKKHSHKERTSEQEATTESGESSVDCESDDQSADDKKQYSTEKIRKKKHGKKSSRTVVIRNINYITSKRNGEKGSHSEDDSSDEGEFIDGDSIKQQVEEAVGTLERRHKATSRHQKKQNGHDNADGLNDSAERVTNGISNNSEGEKISSPWDAFQNLLMSEREPEKSRELPSVQDQDGHEGRSPMLNLESERAPRQREVSCDSFVVTDRSSGNEGRTHIENFEAGDVANPINRRRESTYEELLYSQRGGESGSHVHSSASDFTNVSSKMKTQTEGDWFVSNPTNKSENQCQNVGPRVYDTEFSSSAQDHFYSEKNKKDVLADDSFMIQPRPLVDDQSDFQSRRDISMVSDIVGDAENEYVKQETSRDEKPATLGVSEPDDLYMMLDRDIATEHTVASWSPEMDYENNFSTIAKSKHSDIEADDGGDKSNKNKESGGKVPSKEARSKSLGGHLAKGKYDVQSRTRKPLSGGRTTVPKSKFEKEEETRKRMEELAIQRQKRIAERSSKPGVTKIEKQKSQSLVQEAKKSPKPVLRSSTIDRLAMARTPQKVSATQSPSSQPKKPTSRASGITSSEKFPKSDSKKLINLPI 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8674025 8680191 + CmaCh01G011950.1 Cma01g01195 286888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01195 995 MobiDBLite consensus disorder prediction 821 995 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 463 477 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 765 784 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 953 981 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 176 190 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 882 917 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 822 847 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 300 347 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 566 605 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 478 500 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 652 675 - -
Cma01g01195 995 PANTHER COP1-INTERACTING PROTEIN-RELATED 46 989 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 536 562 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 854 868 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 765 781 - -
Cma01g01195 995 PANTHER COP1-INTERACTING PROTEIN 7 46 989 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 657 675 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 169 190 - -
Cma01g01195 995 MobiDBLite consensus disorder prediction 389 630 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01195 - - - csv:101209039 1442.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01195 Cma09g00882 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01195 Cma-Chr1:8674025 Cma17g00155 Cma-Chr17:778455 1.43E-88 dispersed
Cma01g01195 Cma-Chr1:8674025 Cma09g00882 Cma-Chr9:4340783 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g264 . Blo03g01535 . Bda09g00491 . Bpe08g01035 . . . . Cma01g01195 Cma09g00882 Car01g01020 Car09g00800 Sed04g3168 Cpe06g00706 Cpe02g00714 Bhi09g03391 Tan01g4426 Cmetu07g0553 . Hepe01g1368 Mch11g1091 . Cla11g01780 Cam11g1844 Cec11g1865 Cco11g1875 Clacu11g2006 Cmu11g1815 Cre11g2223 Cone6ag0128 Cone9ag0152 . . . Csa04g02365 Chy07g00094 . . . . . . . Bma07g01191 . . Cmo01g01249 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01195 Cma_Chr01 FPKM 24.387768 24.303476 21.722786 23.835793 17.847239 19.562296 18.371695 8.528887 8.56689 7.387043