Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01196 ATGATGAACGAATCCGTGAACGAAGACGACGAAGAAGAGTGTTTCTACGAGACCCTTGATCGCATTGCCTCCTCATGTTCTTGTTCCACTTCCAATTCCGATGACGATAGAGATTCGAACGCGAACTCCCCCAATTATGATTCCGAGCATCCTTTTCCAATACCCAAATTCCCAATGGCTGTTTCGAACTACGATATTTGGATCTCCGAGCCGGCCTCTGTGTTGGAACGCCGTGGCCGTCTTCTTCGAGAAATGGGTCTTAGTGGTGACCCTTCTCTCTCTCGGTCTAATACGGCTTTGGAATTGGATCATAGAGAAAAGGGTGCTGCCGATTTTGGTCGATCGGCGTCGTCGGAGTATTTGAGTCGTCAACGACAGCTTCCCCCTGTCATCATTCGCTCGAAATCGGATGGTTCGGCTGATTGTAACAGGAACACGAGCTCTTCACAAGCTTCCGGCAGTGATGCTGATAATCAGTGTAATTATTCGTCGTCTATTAATTCTCCTTCAATTCTTTCATTTCATTTGGTTGATGAGATCCCCACCACTTCATTTGCAAATAATCGTAATCGTTTAGTTGTTAAGTCCCTAAGCTGCAAGAGCGACGGAGCTTCATCGGTTGCTTATATTGCTTCACAGCATAAGCCACCTTCTGGGAAAAATTGTAGATGGGCAGATGAGATTCGAAGCGATTCAATGGTTTTGAATACCAATTCTGATCCTAATCGATCGGCATTGTCTCAGAATGGCGAGAATAGACGAGAGATTAGTGAGGATTCGGGTTGTTCTACGAGTGGAACGGTCGATGAGAAAGTCTGCACTATCAAGGATCTTGACAATGGGAAAGAGTTTGTTGTGAATGAGATTAGTGAAAATGGTATGTGGAACAAGCTCAAGGAAGTGGGCACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGGCATTCACCCATTGTTCAAGAACTTATGAGGCGACAGAATGTGGAGGATGGTTGTAATGGTTGTAACGAAAATGTTGATTTAAATGTGAATGGGGATATCGGTAGCGGTTCGAAATTGAAAAAGAAAGGAGGTTGGTTGAAGAGTATAAAGAATGTTGCTAGCACGGTGAAGGGTCAAAAGGAGAGACGTAGCAGTGACGAGAGGGATACTTCATCTGAGAAGGGTGGAAGGAGGTCAAGCTCTGCAACAGATGATAGCCAAGATGTTTCGTTTCATGGACCGGAGAGAGTACGAGTTCGGCAGTATGGAAAGTCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAAGCCCACAGTGGGTCAATATGGACCATTAAGTTCAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATCATTCATGTTTGGCAGGTCGTCGAGTCGGAGAAGAAGGGCGAGCTACTGATGGAGAAACCAGAAGAAGGGAATTTGAGTTTCTTACTTACAGCTAACGAATCACCAGAGCCGACTTCATTATCTCCAAATGTGGATAGTCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGCCGAAAATCAGTGAGCTTGGAGAATGTTATAGTGCCAGAGACTGTATTTGGGCTTTCCGAAAAACCTGTCTGTTCATTCGAGGGGCATCTCGATGTCGTGCTCGACCTTTCTTGGTCCAAATCTCAGCATTTGCTCTCATCTTCAATGGACAAAACCGTGAGGCTCTGGCATTTGTCAAGCAAATCCTGTTTGAAAATCTTTTCCCACAGTGATTATGTAACGTGCATCCAGTTTAATCCTATTGACGATAGATACTTCATTAGTGGATCATTAGATGCCAAAGTTCGTATATGGAGTATACCAGATCGTCAAGTCGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGCTATACGCCTGATGGCAAGGGTGCTTTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCTGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAGAACAAGAAGAAAAAATCTAGTCACAAGAAAATTACTGGATTCCAGTTTTCTCCAGGAAGTTCATCAGAAGTGCTGATTACATCTGCAGATTCACGCGTTCGAGTGGTCGATGGTGTTGATCTCGTCTATAGGTTTAAAGGGTTCCGAAATACGAACAGCCAAATCTCGGCCTGTCTTTCATCGAACGGCAGGTACGTGATATCAGCGAGCGAGGATTCACATGTGTACATATGGAAGCACGAAGCTGATTCTCGACCCAGTAGGAGCAAGGGAGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCAAGACGTCTCCGTTGCTATTCCGTGGCCTGGTTTAGGCGACACATGGGAACTTCAAGACAATTATCGTGGAGATGACAACACAATCGAAAACCATCTCGACGAAATCTCCTCTGCTAACCATCCCCCTACACCTGTGGAAGTAGCAAACGGCAGCGAGGATTCACTCTCGGCATCTGGTTGCACGAACAGCCCTCTCCACGGAACACTTTCGAGTGCCACCAACAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCGGCGGAAAAGCTGATTGTGAATACTCAGAACAACCGTAGTCCTCATTCCAGTGAAATGTTTCAGGGATCATCAGCATGGGGTATGGTGATTGTGACTGCTGGGCTTCGAGGCGAAATCCGAACATTCCAAAACTTCGGATTTCCAGTTAAGATTTAA 2754 45.53 MMNESVNEDDEEECFYETLDRIASSCSCSTSNSDDDRDSNANSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRGRLLREMGLSGDPSLSRSNTALELDHREKGAADFGRSASSEYLSRQRQLPPVIIRSKSDGSADCNRNTSSSQASGSDADNQCNYSSSINSPSILSFHLVDEIPTTSFANNRNRLVVKSLSCKSDGASSVAYIASQHKPPSGKNCRWADEIRSDSMVLNTNSDPNRSALSQNGENRREISEDSGCSTSGTVDEKVCTIKDLDNGKEFVVNEISENGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNGCNENVDLNVNGDIGSGSKLKKKGGWLKSIKNVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGELLMEKPEEGNLSFLLTANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLENVIVPETVFGLSEKPVCSFEGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFSPGSSSEVLITSADSRVRVVDGVDLVYRFKGFRNTNSQISACLSSNGRYVISASEDSHVYIWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGLGDTWELQDNYRGDDNTIENHLDEISSANHPPTPVEVANGSEDSLSASGCTNSPLHGTLSSATNSYFFDRISATWPAEKLIVNTQNNRSPHSSEMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPVKI 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8686397 8692784 + CmaCh01G011960.1 Cma01g01196 286889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01196 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 587 IPR001680 GO:0005515
Cma01g01196 917 MobiDBLite consensus disorder prediction 86 160 - -
Cma01g01196 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 581 - -
Cma01g01196 917 SUPERFAMILY WD40 repeat-like 431 758 IPR036322 GO:0005515
Cma01g01196 917 MobiDBLite consensus disorder prediction 138 160 - -
Cma01g01196 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 621 - -
Cma01g01196 917 MobiDBLite consensus disorder prediction 494 520 - -
Cma01g01196 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 435 476 IPR001680 GO:0005515
Cma01g01196 917 MobiDBLite consensus disorder prediction 373 398 - -
Cma01g01196 917 Gene3D - 420 782 IPR015943 GO:0005515
Cma01g01196 917 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515
Cma01g01196 917 Pfam WD domain, G-beta repeat 729 755 IPR001680 GO:0005515
Cma01g01196 917 Pfam WD domain, G-beta repeat 542 577 IPR001680 GO:0005515
Cma01g01196 917 Pfam WD domain, G-beta repeat 434 466 IPR001680 GO:0005515
Cma01g01196 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 435 468 - -
Cma01g01196 917 MobiDBLite consensus disorder prediction 234 265 - -
Cma01g01196 917 MobiDBLite consensus disorder prediction 25 47 - -
Cma01g01196 917 MobiDBLite consensus disorder prediction 814 839 - -
Cma01g01196 917 PRINTS G protein beta WD-40 repeat signature 454 468 IPR020472 -
Cma01g01196 917 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Cma01g01196 917 PRINTS G protein beta WD-40 repeat signature 607 621 IPR020472 -
Cma01g01196 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 621 IPR001680 GO:0005515
Cma01g01196 917 MobiDBLite consensus disorder prediction 371 419 - -
Cma01g01196 917 PANTHER WD REPEAT DOMAIN 44 6 917 IPR040324 -
Cma01g01196 917 MobiDBLite consensus disorder prediction 234 251 - -
Cma01g01196 917 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 6 917 - -
Cma01g01196 917 MobiDBLite consensus disorder prediction 25 53 - -
Cma01g01196 917 SMART WD40_4 674 713 IPR001680 GO:0005515
Cma01g01196 917 SMART WD40_4 714 755 IPR001680 GO:0005515
Cma01g01196 917 SMART WD40_4 428 467 IPR001680 GO:0005515
Cma01g01196 917 SMART WD40_4 623 661 IPR001680 GO:0005515
Cma01g01196 917 SMART WD40_4 540 578 IPR001680 GO:0005515
Cma01g01196 917 SMART WD40_4 581 620 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01196 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1605.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01196 Cma09g00880 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01196 Cma-Chr1:8686397 Cma07g00983 Cma-Chr7:4752668 2.76E-06 dispersed
Cma01g01196 Cma-Chr1:8686397 Cma09g00880 Cma-Chr9:4318241 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01196 Cma_Chr01 FPKM 9.462493 10.404422 6.799223 6.416368 6.637736 7.168475 6.626064 7.001165 6.667492 6.727052