Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01204 ATGGCTGAAAATGCTGACCCAGAGGGGCGATCTCTGGCTTTGACGCCCACATGGTCTGTTGCTTCTGTATTGACAATTTTTGTGGCTGTTTCATTGCTTGTTGAACGGTCCATCCATAGGCTAAGCTCTTGGCTGGGAAAAACTCATAGAAAGCCTTTATTTGAGGCAGTGGAGAAAATGAAAGAAGAGTTAATGTTGCTTGGATTCATTTCTTTACTTCTGACAGCAACATCTAGCGTGATATCGAATATCTGCGTTCCATCCAAGTTTTATGATACCTCTTTCACTCCATGCACCCAGTCAGAGATTGATGAACAAAATGAGGATAATAGTTCATCAGAGAAACGAAAACTATATATGGTTTCTGTTTTTCCACATTTGTATAGGAGGATGCTAACTGTGAACAAAAATACTTGCAAAGAGGGTCATGAGCCATTTGTTTCTTATGAAGGTCTCGAACAATTGCATCGCTTTATCTTTATAATGGCAGTGACTCATATATTTTATAGTTGCTTGACAATGTTGCTGGCAATTGTGAAGATCCACAGTTGGAGAGTATGGGAAAATGAAGCTCAAATGGACCGCCATGATTCATTCAGTGATACTACGAGAAAAAAAATAATGCAGAGACAATCTACCTTTGTACAATATCACACCTCCAATCCTTTAACCAGGAAGAGTGTTCTTATTTGGATGACATGTTTCTTTCGGCAATTTGGGCGTTCTGTTGTTCGTTCCGACTACCTTGCACTTCGCAAAGGCTTCATCATGAATCACAATCTCTCATCGAAATATGATTTCCATAGCTACATGGTTCGTTCGATGGAAGAAGAATTCCAGAGGATAGTTGGTGTGAGCGGTCCACTATGGGGATTTGTTGTTGCGTTTCTGCTGTTTAATGTGAAAGGGTCTAATCTATACTTTTGGATAGCAACTATTCCTGTTACTCTTGTTCTTTTAGTAGGCACAAAGTTACAGCATATTATTGCAACTTTGACATTGGAAAATGCTGGTATAACCGGCTTTGTTTCTGGAGCAAAGCTGAGGCCTCGTGACGATCTTTTCTGGTTTAAGAAGCCTGAACTCCTGTTGTCCTTGATCCATTTTGTTCTTTTTCAGAATGCTTTTGAATTGGCTTCGTTCTTCTGGTTCTGGTGGCAATTTGGATACAGTTCTTGCTTCATTAGTAATCATCTGCTTGTCTATATAAGGCTGATCTTGGGGTTTGCTGGACAGTTTCTTTGCAGTTATAGCACCTTGCCCCTGTATGCACTGGTTACTCAGATGGGAACAAACTACAAGGCTGCCTTAATTCCACAAAGGATAAGAGAAACAATCCATGGGTGGGGTAAGTCAGCTAGAAGGAAGAGAAGGCTCCGGATATTTACTGATGATGCCACATTCAACACAGAAACAAGCACTGTGATGTCACTAGAGGACGACGACAATCCTGATACACCCAAAGTTGCCACTGGCTATGCCGAAATTGAGTTGCAGCCACCTACTGCAGTGAATGTATCCCTCTCTGTTGCTAATGATACATCACGTGGGGTAAAAACTGGCCTTCAACCCTCTCGGTCCCTTTCTTCACCTGTCACTCAAAACTTCGATGTCAAAAACTCTTTAAGAAGCTCATCTATGCCGGTACGAAGATAG 1656 41.43 MAENADPEGRSLALTPTWSVASVLTIFVAVSLLVERSIHRLSSWLGKTHRKPLFEAVEKMKEELMLLGFISLLLTATSSVISNICVPSKFYDTSFTPCTQSEIDEQNEDNSSSEKRKLYMVSVFPHLYRRMLTVNKNTCKEGHEPFVSYEGLEQLHRFIFIMAVTHIFYSCLTMLLAIVKIHSWRVWENEAQMDRHDSFSDTTRKKIMQRQSTFVQYHTSNPLTRKSVLIWMTCFFRQFGRSVVRSDYLALRKGFIMNHNLSSKYDFHSYMVRSMEEEFQRIVGVSGPLWGFVVAFLLFNVKGSNLYFWIATIPVTLVLLVGTKLQHIIATLTLENAGITGFVSGAKLRPRDDLFWFKKPELLLSLIHFVLFQNAFELASFFWFWWQFGYSSCFISNHLLVYIRLILGFAGQFLCSYSTLPLYALVTQMGTNYKAALIPQRIRETIHGWGKSARRKRRLRIFTDDATFNTETSTVMSLEDDDNPDTPKVATGYAEIELQPPTAVNVSLSVANDTSRGVKTGLQPSRSLSSPVTQNFDVKNSLRSSSMPVRR 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8723068 8730135 + CmaCh01G012040.1 Cma01g01204 286897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01204 551 Pfam Mlo family 10 464 IPR004326 GO:0006952|GO:0016021
Cma01g01204 551 MobiDBLite consensus disorder prediction 514 551 - -
Cma01g01204 551 PANTHER MLO-LIKE PROTEIN 11 4 506 - -
Cma01g01204 551 PANTHER MLO-LIKE PROTEIN 1 4 506 IPR004326 GO:0006952|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01204 K08472 MLO; mlo protein - csv:101207170 1002.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01204 Cma04g00535 CCT
Cma01g01204 Cma09g00875 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01204 Cma-Chr1:8723068 Cma04g00535 Cma-Chr4:2720460 2.14E-165 dispersed
Cma16g01241 Cma-Chr16:9376688 Cma01g01204 Cma-Chr1:8723068 8.14E-133 dispersed
Cma15g00316 Cma-Chr15:1463951 Cma01g01204 Cma-Chr1:8723068 0 transposed
Cma01g01204 Cma-Chr1:8723068 Cma09g00875 Cma-Chr9:4293452 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g246 Blo03g00649 Blo03g01542 Bda07g00291 . . Bpe08g01029 . . . . Cma01g01204 Cma09g00875 Car01g01028 Car09g00788 Sed04g1597 Cpe06g00699 . Bhi09g03403 Tan01g0784 Cmetu04g0308 . . . . Cla11g01772 Cam11g1837 Cec11g1858 Cco11g1866 Clacu11g1998 Cmu11g1807 Cre11g2216 Cone6ag0137 Cone9ag0162 . . Lsi04g01324 Csa04g02353 Chy07g00085 . . . . . Bpe11g00487 . Bma07g01182 . . Cmo01g01256 Cmo09g00864 Cma04g00535 . Car04g00505 . . . . . . . . . . Cla05g01024 Cam05g1118 Cec05g1128 Cco05g1118 Clacu05g1109 Cmu05g1058 Cre05g1133 . . Chy06g01139 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00316 . 2 553 MLO family AT5G53760 70.0 7.5e-217 750.7
Cma01g01204 CCT,CST 5 548 MLO family AT5G53760 70.1 3.5e-214 741.9
Cma09g00875 CCT,CST 10 553 MLO family AT5G53760 67.0 1.2e-206 716.8
Cma01g00538 CCT,ECH 10 482 MLO family AT3G45290 53.5 1.1e-137 487.6
Cma13g00190 . 12 464 MLO family AT3G45290 52.5 4.4e-128 455.7
Cma15g00316 . 3 553 MLO family AT1G26700 68.3 7.8e-211 730.7
Cma01g01204 CCT,CST 1 551 MLO family AT1G26700 67.2 3.6e-208 721.8
Cma09g00875 CCT,CST 1 553 MLO family AT1G26700 64.9 1.2e-200 696.8
Cma18g00888 . 7 495 MLO family AT2G39200 66.8 3.8e-192 668.7
Cma13g00188 . 8 536 MLO family AT2G39200 63.4 7.1e-191 664.5
Cma20g00477 CCT,CST,ECH 8 509 MLO family AT2G39200 67.4 3.5e-190 662.1
Cma04g01359 . 7 524 MLO family AT2G39200 65.0 1.0e-189 660.6
Cma02g00883 CCT,CST,ECH 8 503 MLO family AT2G39200 66.1 4.0e-186 648.7
Cma07g00379 CST 28 472 MLO family AT2G39200 50.2 7.8e-121 431.8
Cma20g00477 CCT,CST,ECH 8 414 MLO family AT1G61560 67.8 3.2e-161 565.5
Cma02g00883 CCT,CST,ECH 8 414 MLO family AT1G61560 67.6 6.1e-160 561.2
Cma13g00188 . 8 416 MLO family AT1G61560 66.9 5.7e-158 554.7
Cma18g00888 . 7 404 MLO family AT1G61560 65.2 2.9e-154 542.3
Cma04g01359 . 7 408 MLO family AT1G61560 65.0 1.0e-151 533.9
Cma07g00379 CST 28 424 MLO family AT1G61560 53.4 4.9e-117 418.7
Cma03g00619 CST 30 427 MLO family AT1G61560 52.0 2.4e-116 416.4
Cma05g00968 . 10 412 MLO family AT1G61560 50.5 6.2e-112 401.7
Cma03g00619 CST 12 495 MLO family AT2G17430 61.0 9.4e-169 590.9
Cma07g00379 CST 19 492 MLO family AT2G17430 63.0 2.7e-168 589.3
Cma06g00168 . 85 549 MLO family AT2G17430 61.8 9.1e-156 547.7
Cma05g00968 . 2 476 MLO family AT2G17430 58.8 4.0e-151 532.3
Cma02g00883 CCT,CST,ECH 7 456 MLO family AT2G17430 50.4 2.3e-122 436.8
Cma03g00619 CST 2 572 MLO family AT2G17480 62.2 2.9e-195 679.1
Cma07g00379 CST 7 569 MLO family AT2G17480 62.3 7.1e-194 674.5
Cma06g00168 . 50 631 MLO family AT2G17480 58.2 1.3e-179 627.1
Cma05g00968 . 12 461 MLO family AT2G17480 63.2 3.0e-160 562.8
Cma13g00188 . 8 457 MLO family AT2G17480 52.7 1.2e-124 444.5
Cma20g00477 CCT,CST,ECH 8 461 MLO family AT2G17480 50.2 1.0e-123 441.4
Cma05g00968 . 12 377 MLO family AT1G42560 63.9 3.2e-131 465.7
Cma07g00379 CST 28 388 MLO family AT1G42560 60.2 2.1e-122 436.4
Cma03g00619 CST 30 391 MLO family AT1G42560 58.3 5.7e-120 428.3
Cma06g00168 . 85 444 MLO family AT1G42560 57.0 4.8e-111 398.7
Cma08g00991 . 6 416 MLO family AT4G24250 54.3 2.6e-115 412.9
Cma17g00044 . 6 419 MLO family AT4G24250 53.7 3.4e-115 412.5
Cma20g01051 . 10 418 MLO family AT4G24250 51.5 3.0e-111 399.4
Cma03g00619 CST 7 392 MLO family AT5G65970 64.2 7.9e-143 504.6
Cma07g00379 CST 8 389 MLO family AT5G65970 64.1 2.1e-140 496.5
Cma06g00168 . 84 444 MLO family AT5G65970 65.4 7.1e-136 481.5
Cma05g00968 . 9 377 MLO family AT5G65970 60.3 5.9e-122 435.3
Cma20g00477 CCT,CST,ECH 2 379 MLO family AT5G65970 51.6 2.9e-105 379.8
Cma02g00883 CCT,CST,ECH 2 379 MLO family AT5G65970 50.3 2.1e-103 373.6
Cma05g00968 . 2 537 MLO family AT2G33670 60.3 5.6e-176 614.8
Cma03g00619 CST 22 475 MLO family AT2G33670 60.4 3.8e-156 548.9
Cma07g00379 CST 28 472 MLO family AT2G33670 61.3 5.0e-156 548.5
Cma06g00168 . 85 527 MLO family AT2G33670 57.3 3.0e-137 486.1
Cma13g00188 . 6 482 MLO family AT2G33670 50.3 3.7e-127 452.6
Cma18g00888 . 64 520 MLO family AT1G11310 62.8 3.6e-170 595.5
Cma13g00188 . 63 579 MLO family AT1G11310 59.0 1.4e-166 583.6
Cma20g00477 CCT,CST,ECH 63 518 MLO family AT1G11310 62.7 2.3e-164 576.2
Cma04g01359 . 64 525 MLO family AT1G11310 61.7 1.2e-162 570.5
Cma02g00883 CCT,CST,ECH 63 518 MLO family AT1G11310 61.9 1.4e-161 567.0
Cma07g00379 CST 83 500 MLO family AT1G11310 50.1 2.1e-109 393.7
Cma17g00044 . 1 508 MLO family AT2G44110 59.6 1.1e-166 583.9
Cma08g00991 . 1 499 MLO family AT2G44110 60.1 7.1e-163 571.2
Cma17g00044 . 1 489 MLO family AT4G02600 76.1 5.5e-214 741.1
Cma08g00991 . 1 507 MLO family AT4G02600 73.2 9.3e-214 740.3
Cma20g01051 . 9 445 MLO family AT4G02600 50.1 4.2e-121 432.6
Cma04g00535 CCT 4 561 MLO family AT1G11000 67.2 1.7e-213 739.6
Cma16g01241 . 1 468 MLO family AT1G11000 54.2 4.4e-132 469.2
Cma17g00044 . 1 489 MLO family AT4G02600 76.1 5.5e-214 741.1
Cma08g00991 . 1 507 MLO family AT4G02600 73.2 9.3e-214 740.3
Cma20g01051 . 9 445 MLO family AT4G02600 50.1 4.2e-121 432.6
Cma18g00888 . 64 520 MLO family AT1G11310 62.8 3.6e-170 595.5
Cma13g00188 . 63 579 MLO family AT1G11310 59.0 1.4e-166 583.6
Cma20g00477 CCT,CST,ECH 63 518 MLO family AT1G11310 62.7 2.3e-164 576.2
Cma04g01359 . 64 525 MLO family AT1G11310 61.7 1.2e-162 570.5
Cma02g00883 CCT,CST,ECH 63 518 MLO family AT1G11310 61.9 1.4e-161 567.0
Cma07g00379 CST 83 500 MLO family AT1G11310 50.1 2.1e-109 393.7
Cma01g00538 CCT,ECH 10 482 MLO family AT3G45290 53.5 1.1e-137 487.6
Cma13g00190 . 12 464 MLO family AT3G45290 52.5 4.4e-128 455.7
Cma04g00535 CCT 4 561 MLO family AT1G11000 67.2 1.7e-213 739.6
Cma16g01241 . 1 468 MLO family AT1G11000 54.2 4.4e-132 469.2
Cma05g00968 . 2 537 MLO family AT2G33670 60.3 5.6e-176 614.8
Cma03g00619 CST 22 475 MLO family AT2G33670 60.4 3.8e-156 548.9
Cma07g00379 CST 28 472 MLO family AT2G33670 61.3 5.0e-156 548.5
Cma06g00168 . 85 527 MLO family AT2G33670 57.3 3.0e-137 486.1
Cma13g00188 . 6 482 MLO family AT2G33670 50.3 3.7e-127 452.6
Cma20g00477 CCT,CST,ECH 8 414 MLO family AT1G61560 67.8 3.2e-161 565.5
Cma02g00883 CCT,CST,ECH 8 414 MLO family AT1G61560 67.6 6.1e-160 561.2
Cma13g00188 . 8 416 MLO family AT1G61560 66.9 5.7e-158 554.7
Cma18g00888 . 7 404 MLO family AT1G61560 65.2 2.9e-154 542.3
Cma04g01359 . 7 408 MLO family AT1G61560 65.0 1.0e-151 533.9
Cma07g00379 CST 28 424 MLO family AT1G61560 53.4 4.9e-117 418.7
Cma03g00619 CST 30 427 MLO family AT1G61560 52.0 2.4e-116 416.4
Cma05g00968 . 10 412 MLO family AT1G61560 50.5 6.2e-112 401.7
Cma03g00619 CST 12 495 MLO family AT2G17430 61.0 9.4e-169 590.9
Cma07g00379 CST 19 492 MLO family AT2G17430 63.0 2.7e-168 589.3
Cma06g00168 . 85 549 MLO family AT2G17430 61.8 9.1e-156 547.7
Cma05g00968 . 2 476 MLO family AT2G17430 58.8 4.0e-151 532.3
Cma02g00883 CCT,CST,ECH 7 456 MLO family AT2G17430 50.4 2.3e-122 436.8
Cma03g00619 CST 2 572 MLO family AT2G17480 62.2 2.9e-195 679.1
Cma07g00379 CST 7 569 MLO family AT2G17480 62.3 7.1e-194 674.5
Cma06g00168 . 50 631 MLO family AT2G17480 58.2 1.3e-179 627.1
Cma05g00968 . 12 461 MLO family AT2G17480 63.2 3.0e-160 562.8
Cma13g00188 . 8 457 MLO family AT2G17480 52.7 1.2e-124 444.5
Cma20g00477 CCT,CST,ECH 8 461 MLO family AT2G17480 50.2 1.0e-123 441.4
Cma05g00968 . 12 377 MLO family AT1G42560 63.9 3.2e-131 465.7
Cma07g00379 CST 28 388 MLO family AT1G42560 60.2 2.1e-122 436.4
Cma03g00619 CST 30 391 MLO family AT1G42560 58.3 5.7e-120 428.3
Cma06g00168 . 85 444 MLO family AT1G42560 57.0 4.8e-111 398.7
Cma03g00619 CST 7 392 MLO family AT5G65970 64.2 7.9e-143 504.6
Cma07g00379 CST 8 389 MLO family AT5G65970 64.1 2.1e-140 496.5
Cma06g00168 . 84 444 MLO family AT5G65970 65.4 7.1e-136 481.5
Cma05g00968 . 9 377 MLO family AT5G65970 60.3 5.9e-122 435.3
Cma20g00477 CCT,CST,ECH 2 379 MLO family AT5G65970 51.6 2.9e-105 379.8
Cma02g00883 CCT,CST,ECH 2 379 MLO family AT5G65970 50.3 2.1e-103 373.6
Cma15g00316 . 2 553 MLO family AT5G53760 70.0 7.5e-217 750.7
Cma01g01204 CCT,CST 5 548 MLO family AT5G53760 70.1 3.5e-214 741.9
Cma09g00875 CCT,CST 10 553 MLO family AT5G53760 67.0 1.2e-206 716.8
Cma18g00888 . 7 495 MLO family AT2G39200 66.8 3.8e-192 668.7
Cma13g00188 . 8 536 MLO family AT2G39200 63.4 7.1e-191 664.5
Cma20g00477 CCT,CST,ECH 8 509 MLO family AT2G39200 67.4 3.5e-190 662.1
Cma04g01359 . 7 524 MLO family AT2G39200 65.0 1.0e-189 660.6
Cma02g00883 CCT,CST,ECH 8 503 MLO family AT2G39200 66.1 4.0e-186 648.7
Cma07g00379 CST 28 472 MLO family AT2G39200 50.2 7.8e-121 431.8
Cma08g00991 . 6 416 MLO family AT4G24250 54.3 2.6e-115 412.9
Cma17g00044 . 6 419 MLO family AT4G24250 53.7 3.4e-115 412.5
Cma20g01051 . 10 418 MLO family AT4G24250 51.5 3.0e-111 399.4
Cma15g00316 . 3 553 MLO family AT1G26700 68.3 7.8e-211 730.7
Cma01g01204 CCT,CST 1 551 MLO family AT1G26700 67.2 3.6e-208 721.8
Cma09g00875 CCT,CST 1 553 MLO family AT1G26700 64.9 1.2e-200 696.8
Cma17g00044 . 1 508 MLO family AT2G44110 59.6 1.1e-166 583.9
Cma08g00991 . 1 499 MLO family AT2G44110 60.1 7.1e-163 571.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001851 1 6 2 2 2 1 3 2 1 2 2 2 3 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 4 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01204 Cma_Chr01 FPKM 5.103261 5.850974 5.42828 6.553003 6.638703 6.717741 6.257472 1.047436 0.858779 1.036862