Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01205 ATGGATCAAACCTATTCTGCATCTGAGGCTTACTTAGAGTCTGAACATGATGTCTCTCTTAAGCAAAACTGGAAATCTATGTCAGCCCAGTCAACTGTATCCGAAGATGCAAATGGTTGCTTCGATTGCAACATTTGCTTGGACTCTGCAGCTGACCCTGTTGTCACCCTCTGTGGTCACCTCTTCTGCTGGCCCTGCATTTACAAATGGTTTCATGTACAAATCTCCAGCAACGAAACCGAAAACACACACAACTGCCCTGTTTGTAAGGCTAGCATCACTCTCTCCTCTTTGGTTCCCCTCTATGGCCGTGGCATGTCGAATTCAGATTCTGAATCCAAGAAGTCTCATTTGGGTATAACCATACCTCGAAGGCCACCACCGTCCATGAACACTCCGCCCCATTCTAATGCAGCCTCTGCATTGCATCCTAGTGAGGAACTTCATCCAAATTATATCCGCTCGCCATTGCACCGGATCTATCACCAACAATATTTCCCTCAGGCATATGGTAACTTTGCCCCATACGCACCATCTTATCTCGGCAATGCCATGGTAACAAGTCTGCTAAACCCGACGATTGGGTTGATAGGAGAAACGGTTTACACAAGAATTTTCGGTAGTGCAGATGGGAACTTGTTGCCTTACCCGCCTTACAATCACTCGGTCGCAGGGAATATTGGCACCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTGAATAGAGTTTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTGTTATACTCCCATGCTGGCTGGCTCGCCTTTTACTGGTTCAACGGCTCATTTCTCCACTCGGGGAAACCAGGGGGTGTGAAGATGAGGGGTCCTTTAGGGGCAGTGATTGGGAGGTACCCCTCAACTGATGGGAGTGCCCAAATGGGTGGGATCATTAGCCACAATAGAAAATGCAGGGATCTTGTGTTTCTTCTCATCTTTATAGCTTTCTGGGTTGGAATGATTGTTAACTCCAGCTTTGGATTCAACCAAGGAAACCCATTAAGGCTTACATATGGACTAGACTATAAAGGAAACGTATGTGGTGACAAGCATGCTAATCCCGGCCTCCGTGAATTGGAGCTGAAATATTGGTTGAATCCTAATCAAGTTTATCAAAGTCATCTGAAGGACAGTCAATTTAAGCTGGCCGATGCACGGAGTATATGCTTGTTGGATTGCCCGACTCCTTCGGAAGACTCTCTAAACTGGGTTTGTGACTATCCAGAAGGTGAAATCCGCCTCTCAATGGATGATTGGATAGACAGGAACTATGATTATTTTGAGTTCCTTACGCCTGAGATGAGAAACAGCTCTGTTAACCTTCAGGGTCCTTGTTACCCTGTCATTTTTCCTAGCATAAATGTTTATTGGAGCTGCCAATTCCTTGCTCGCCCCTCGAACGTATCATTAACACATTGGAAGCAGATGGGTGGAGTGAACATAGATGCAGATTTGATCATAGATAAATCTATTCATAAGTCGACCAACTCTCGGTCATTTGTCTTAAAGCGATACGTGTCGGATATTGGGAAGTCATGGCCAGTATTGATTGTTTGTGGAGGAATCTTGCCTCTATTTTTGGCAGTGATTTGGTTGTTAATGGTTCGACATTTCGTTGCTGCAATGCCGTGGGTAACAGTAGTCCTATTCAACGTTCTTATCGTGGCGGTCACAATGTTTTATTACCTTAAAGCTGGATGGATAGGAAATGATGCTATAACTCCCATCATTGGTGAACATGATCCCTACGTCCACATATTTGGAAGGGAGCTCAATCATATGCGCGCTGCTGCTGTTCTAATGACCTTCATTATGGCAGTCTCTGTTCTTACATCGATCGCCATCATCCGCCGAATCATAATGGCAACGTCTGTAGCTGCAAAGGTGATTGGAGAAGTTCAAGCACTCATAATCTTTCCAATCATACCTTATGCTATCCTTGCAATTTTTTACATGTTATGGTTGTCAGCTGCTCTTCATCTCTTTAGCTCTGGTCGGGTTGTCCAGAATAATTGCAACTCAAACTGCTGTACTTATGATCTTGCTTCGAGACGAGTGAACTGTGACCGTTGCTGTGGTTATAGCCTCCGTTATACTCCTCATATCGACATTGCCATCTTTTTTCACCTGTTTGGTTGCTATTGGGCTACTCAATTTTTTGTAGCATGCTCTTCAACAGTCATTGCAGGTTCAGTGGCCTCCTATTATTGGGCTCGTAGCGAAACTTCGCCTGAAATACCATTTCTTCCGGTTTTCGCCTCAATGAAACAGCTAGCAAGATATAACCTTGGGTCCATGGCTCTCGGTTCCTTGACTGTGTCCTTTATGGAATCAATTCGTTTCTTACTCGAGTCTATTCGTCGCAAATTGAAGGTTGCGAGTACCACACCAAATAGCTGGATTGGCAGAGCAGCACATAATACGTCTCGGTTTTGCCTGAGATGTATAGAGTGGATTATCAAATCCGTTAACCGAAATGCGTATATCATGATCGCGATAACGGGCAAGAGCTTCTGCAAGGCGTCTGCTATCGCAACCGAGTTGATTATTAACAACATCCTTCGGATCGGAAAAGTGAATGTGATTGGAGATGTCATTCTGTTTCTTGGAAAACTGTGTGTGAGCCTCGCAAGTGCTCTTTTTGCTTTCCTCATGTTGGATACTCACAAATACAGATCTGCTCATAACAAGATTTCTTCCCCATTGTTTCCAGTCCTGGTTTGCTGGGGACTAGGCTATGTAGTTGCTACACTTTTCTTTGGAGTGGTGGAGATGTCCATTGACACAATAATCCTTTCATACTGTCAAGATTCAGAAGAACATCAAGGCACAGCTCAGTATGCCCCTCCTCTCCTCATGGAGACACTAAATGATCAAAATGAGATGCAAAGACTTACACAAGGACCTCCAAGCTCATGA 2955 44.33 MDQTYSASEAYLESEHDVSLKQNWKSMSAQSTVSEDANGCFDCNICLDSAADPVVTLCGHLFCWPCIYKWFHVQISSNETENTHNCPVCKASITLSSLVPLYGRGMSNSDSESKKSHLGITIPRRPPPSMNTPPHSNAASALHPSEELHPNYIRSPLHRIYHQQYFPQAYGNFAPYAPSYLGNAMVTSLLNPTIGLIGETVYTRIFGSADGNLLPYPPYNHSVAGNIGTRMRRQEMQLDKSLNRVSIFLFCCFIICLLLYSHAGWLAFYWFNGSFLHSGKPGGVKMRGPLGAVIGRYPSTDGSAQMGGIISHNRKCRDLVFLLIFIAFWVGMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHANPGLRELELKYWLNPNQVYQSHLKDSQFKLADARSICLLDCPTPSEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSVNLQGPCYPVIFPSINVYWSCQFLARPSNVSLTHWKQMGGVNIDADLIIDKSIHKSTNSRSFVLKRYVSDIGKSWPVLIVCGGILPLFLAVIWLLMVRHFVAAMPWVTVVLFNVLIVAVTMFYYLKAGWIGNDAITPIIGEHDPYVHIFGRELNHMRAAAVLMTFIMAVSVLTSIAIIRRIIMATSVAAKVIGEVQALIIFPIIPYAILAIFYMLWLSAALHLFSSGRVVQNNCNSNCCTYDLASRRVNCDRCCGYSLRYTPHIDIAIFFHLFGCYWATQFFVACSSTVIAGSVASYYWARSETSPEIPFLPVFASMKQLARYNLGSMALGSLTVSFMESIRFLLESIRRKLKVASTTPNSWIGRAAHNTSRFCLRCIEWIIKSVNRNAYIMIAITGKSFCKASAIATELIINNILRIGKVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYRSAHNKISSPLFPVLVCWGLGYVVATLFFGVVEMSIDTIILSYCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQGPPSS 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8731471 8740042 - CmaCh01G012050.1 Cma01g01205 286898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01205 984 SUPERFAMILY RING/U-box 23 96 - -
Cma01g01205 984 Pfam Plasma-membrane choline transporter 611 951 IPR007603 GO:0022857|GO:0055085
Cma01g01205 984 Pfam Zinc finger, C3HC4 type (RING finger) 43 89 IPR018957 GO:0046872
Cma01g01205 984 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Cma01g01205 984 ProSiteProfiles Zinc finger RING-type profile. 43 90 IPR001841 -
Cma01g01205 984 SMART ring_2 43 89 IPR001841 -
Cma01g01205 984 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 288 979 - -
Cma01g01205 984 CDD RING-HC_AtRMA_like 41 91 - -
Cma01g01205 984 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 103 IPR013083 -
Cma01g01205 984 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 288 979 IPR007603 GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01205 K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5 - csv:101206929 1349.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01205 Cma-Chr1:8731471 Cma11g01874 Cma-Chr11:12436324 9.18E-53 dispersed
Cma20g00759 Cma-Chr20:3579022 Cma01g01205 Cma-Chr1:8731471 5.06E-06 dispersed
Cma01g01205 Cma-Chr1:8731471 Cma13g00649 Cma-Chr13:6121069 6.15E-44 wgd
Cma01g01205 Cma-Chr1:8731471 Cma19g00985 Cma-Chr19:8572181 4.21E-48 wgd
Cma01g01205 Cma-Chr1:8731471 Cma07g00246 Cma-Chr7:1109965 6.07E-53 wgd
Cma01g01205 Cma-Chr1:8731471 Cma09g00872 Cma-Chr9:4278520 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g245 . Blo03g01543 . Bda09g00501 . Bpe08g01028 . . . . Cma01g01205 . Car01g01029 Car09g00786 Sed04g3115 Cpe06g00696 Cpe02g00706 Bhi09g03404 Tan01g4406 Cmetu07g1213 . Hepe01g1378 Mch11g1078 . Cla11g01770 Cam11g1835 Cec11g1856 Cco11g1864 Clacu11g1996 Cmu11g1805 Cre11g2214 Cone6ag0138 Cone9ag0163 . . Lsi04g01327 Csa04g02352 . . . . . . . . . . . Cmo01g01257 Cmo09g00862 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006813 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01205 Cma_Chr01 FPKM 9.347994 10.483608 9.716743 10.068641 9.243828 10.554336 9.843613 13.449887 14.552464 14.812264