Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01209 ATGATTGAAAAAATTTCCATAAAAGACGATAGATTTGGTTCAGAGCGAACCCCCAACTTCCCTCTGCTGGGAGCTATGGGTGTTGAGGTTGTTGGATTCGAGATGGTTGAGGGACCGGTGGATTCGGTATCATTAGCAGATAATTCGGTTTCGAAAAGCAAAGAAAATGGAGATTTAGATCAATTGCCTGAAGAAAATGCGCCCATAAAGTTTGGTTCTCATGAAGATGAGCCTGTTAAAGAACAGGCAGATGTTTCTTCAGCCTCGAACGTTCCTAAAGATGCTGCTGATGAATGGCCTGCACCTAAACAAATCCATACGTTCTACTTCATAAGGTATCGGCCGTATGACGATCCGAATATCAAGGCTAACATTGATTTGGCTGATAAAGAGATACAGAAGAGGAGTCAAGCTCGGTTTCAAATCACCGAAACGCTCAAGGGGAAAAGGGCTGAAAGAGCAGAGCTGATTACTCAAGTGAGGGCTCTGAAAGATGACAACCGACAATTTAAATCAATTGTTGAGGAGAAAATTAAGGAAATCGAACCTCTTAATCAAGCTCTTGGCAAGTTCCGTAATGCAAACAATTCTGGTCGTAACGGTGGTTTATGTTCATCTGAGGAAGAGCTCAACGCTTCTATTCAAGCTTTACAATACCATATACAACACGAGAGCATCCCACTTTCTGAGGAAAAGCAAATTTTAAGAGAAATTAAACAGCTTGAAGGGACAAGGGAGAAAGTTATTGCTAATGCTGCTATGAGAGCTAAGCTCCAGGATTCAATGGTTCATAAAGAAGCCATCCAAGATCAAGTCAAGATTATGGGTGGTGATTTGAATGGCGTGAGGAAGGAACATCAAGCAGTTAGAGCCAAGATAAAGCACATCGAGGAGGCTTTGAAGGCAATAGACGATGATATTAAAACTTTGCAAGAGGAATTAACTTCTGTTACCGAGAAGAGAGGCAGAACGTATGAAAGCATGCAGCAACTTAGGAAGAACCGCGATGAGGGGAACGCCCACTTTTATCAAAGCCGATCGATCATGAACAAAGCTAAAGACCTTGCTGCAAAGAAGGACATCAAGGCCCTTGAGGAGCTCGCTTGTGATGAGGTCGAGAAGTTTATGTCCCTCTGGAATGGTGATAAGGCTTTCAGGGATGACTATGAGAAAAGAATTCTTGCTTCATTGGATGTTCGGCAGATGAGTAGGGATGGTCGGATAAGGAACCCAGATGAAAGGCCAATACTTGCACCTGTAGAACTTGCGCCTCCTCGAACTGAGGCAGCACCAAAACCTATCGTTAAACGAGCTAAGGAAGAACCGAAACCAGTACCATCTGATACTCTTTCTGCACAGAAAGTTGATAAAGAAGTTAAACCCAAAGCTGGAAAGCCGTCACGCCCCTTGGAAAAAGAGGATAAAGCAGAGGAGGAGATCCCTGGCTTAGAAAAATTATCGAAAGAGATCCCTAAAGAACCCGAAGTCGATCTCATGAAATTGAAGGAAATGAAGAGGGTTGAAGAAATTGCAAAAGCTAAGCTAGCCATGGAAAGGAAGAAGAAATTGCAAGAGAAAGCTGCTGCAAAAGCCTCTCTACGAGCTCAGAAGGAAGCAGAAAAGAAACTGAAGGAAATTGACCGCGAAAAGAAAGCGATGAAGAAGATGACAGCATCTGGATTTGCTTTTCTTCCTGATGAAGAATCTGCTCAAGCTGATGCAGTTGAGGAGGAATCCAAGGAATCCAAAGAGCTGGAAAAGGTGGATGAAAACGCCGAAGCCCCAGTTCCAGCCAAGACGAACATCCAAAAGGAGACCCGTATTAGGAGCCGTGGCAACAAGCAAAGAGGGGTTGATTCGATTCCGAAAGTGATTCGGAAGCGCAAGAAGGCAAACAACTACTGGGTGTGGGCTGCTCCTGCTGCTGCTGCCGCGCTACTCGTGATCCTTCTCTTGCTTGGGTACTACTACTACTACCTTATCTAA 1986 44.11 MIEKISIKDDRFGSERTPNFPLLGAMGVEVVGFEMVEGPVDSVSLADNSVSKSKENGDLDQLPEENAPIKFGSHEDEPVKEQADVSSASNVPKDAADEWPAPKQIHTFYFIRYRPYDDPNIKANIDLADKEIQKRSQARFQITETLKGKRAERAELITQVRALKDDNRQFKSIVEEKIKEIEPLNQALGKFRNANNSGRNGGLCSSEEELNASIQALQYHIQHESIPLSEEKQILREIKQLEGTREKVIANAAMRAKLQDSMVHKEAIQDQVKIMGGDLNGVRKEHQAVRAKIKHIEEALKAIDDDIKTLQEELTSVTEKRGRTYESMQQLRKNRDEGNAHFYQSRSIMNKAKDLAAKKDIKALEELACDEVEKFMSLWNGDKAFRDDYEKRILASLDVRQMSRDGRIRNPDERPILAPVELAPPRTEAAPKPIVKRAKEEPKPVPSDTLSAQKVDKEVKPKAGKPSRPLEKEDKAEEEIPGLEKLSKEIPKEPEVDLMKLKEMKRVEEIAKAKLAMERKKKLQEKAAAKASLRAQKEAEKKLKEIDREKKAMKKMTASGFAFLPDEESAQADAVEEESKESKELEKVDENAEAPVPAKTNIQKETRIRSRGNKQRGVDSIPKVIRKRKKANNYWVWAAPAAAAALLVILLLLGYYYYYLI 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8761620 8765348 + CmaCh01G012090.1 Cma01g01209 286902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01209 661 Coils Coil 520 556 - -
Cma01g01209 661 Coils Coil 146 166 - -
Cma01g01209 661 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 53 658 - -
Cma01g01209 661 MobiDBLite consensus disorder prediction 575 593 - -
Cma01g01209 661 Coils Coil 279 320 - -
Cma01g01209 661 MobiDBLite consensus disorder prediction 405 491 - -
Cma01g01209 661 MobiDBLite consensus disorder prediction 565 600 - -
Cma01g01209 661 PANTHER PROTON PUMP-INTERACTOR 1-LIKE 53 658 - -
Cma01g01209 661 MobiDBLite consensus disorder prediction 46 98 - -
Cma01g01209 661 MobiDBLite consensus disorder prediction 453 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01209 - - - cmos:111446437 1117.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01209 Cma09g00862 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01209 Cma-Chr1:8761620 Cma01g02052 Cma-Chr1:13030257 1.90E-34 dispersed
Cma09g00862 Cma-Chr9:4227156 Cma01g01209 Cma-Chr1:8761620 0 transposed
Cma01g01209 Cma-Chr1:8761620 Cma09g00861 Cma-Chr9:4226752 6.78E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g215 . . . . Bpe09g00235 . Bma10g00497 Bma13g00953 . . Cma01g01209 Cma09g00862 Car01g01034 Car09g00775 Sed01g2386 Cpe06g00686 Cpe02g00701 Bhi09g03432 Tan01g4391 Cmetu07g0639 . Hepe01g1388 Mch11g1067 . Cla11g01760 Cam11g1827 Cec11g1847 Cco11g1854 Clacu11g1987 Cmu11g1796 Cre11g2204 Cone6ag0148 Cone9ag0173 . . Lsi04g02071 Csa04g02341 Chy07g00073 . . Blo10g00763 Bda05g00772 Bda12g00839 . Bpe03g00839 . . . Cmo01g01263 Cmo09g00852 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005212 2 1 2 3 2 0 1 1 0 1 1 1 2 0 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01209 Cma_Chr01 FPKM 51.930515 58.253376 56.175781 62.020168 37.600815 37.978527 39.329773 125.420105 122.627731 111.907051