Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01210 ATGGCTTCCTCCAATTCCTTCTTCACCACGCCGACCAAAACCCCTTCAGAAAAGTCCTCCAGAAAGACTCACAACTCCTCCCGGATGGACGCGTCCGAGTCCAGATCCCGATTTGAAGCCTACAATCGTCTTCAGGCGGCGGCTGTGGCGTTCGGTGAAAAGCTTCCGATTCCTGAGATCGTTGCCTTGGGTGGCCAATCCGACGGCAAAAGCTCTCTCTTAGAAGCCCTGCTTGGATTCCGCTTCAATGTCCGCGAAGTCGAAATGGGGACACGCAGGCCTTTGATCCTCCAAATGGTCCATGATCCGACTGCTCTCGATCCCCGTTGCCGATTTCAGGACGAAGATTCTGAAGAATATGGAAATCCTGTTGTTTTAGCATCTGCAATTGCAGACATTATCAAGTCTCGAACTGAGGCGCTGTTGAAGAAGACCAAAACTGCAGTTTCTAACATCCCTATTGTGATGAGAGCAGAGTATGCACATTGCCCCAACCTTACCATTATTGATACCCCTGGCTTTGTTCTTAAGGCAAGGAAGGGAGAGCCAGAGAACACACCACAAGAAATTCTTTCAATGGTGAAGTCCCTTGCAAGTCCTCCCCATCGTATCCTCTTGTTCCTTCAACAAAGTAGTGTAGAGTGGTGTTCTTCATTGTGGTTGGATTCAATTCGTGAAATTGATCCCGCATTCAGACGGACAATTGTTGTTGTCTCCAAATTTGATAATCGTCTTAAGGAATTCGGTGACCGATGGGAAGTGGATAAGTATTTGAGTGCCAGTGGTTACCTTGGAGATAACACTCATCCATTTTTTGTGGCCCTGCCAAAGGACAGAAATACTGTTTCTAATGATGAATTTCGGCGACAAATATCTCAAGTGGATTCTGAAGTTCTTCGTCATCTACGTGATGGTGTCAAGGGAGGGTTCGACGAAGAGAAATTTAGATCTCACATTGGTTTTGGCTGCCTGAGGGAATATCTAGAATCCGAGCTTCAGAAGAGATACAAGGAAGCTGCTCCAGCAACTTTGGCTTTGCTAGAGCAACGTTGTGGTGAAGTTGCATCTGAACTATGTAGAATGGAGTCTAAAATACAAGCTACTTCAGATATTGCACATCTTAGGAAATATGCTATGCTGTATACAGCTTCTATCAGCAATCATGTGAGCGCATTGATTGAAGGTGCGGCAGATCCTGCACCAGAGCAATGGGGCAAAACTACTTTGGAGGAACAGTCGGGAAGTGGCATTGGAAGTTGGCCTGGTGTTACATCAGAGGTGAAGCCTGCCAACTCCAGCCTTCGGTTGTATGGTGGGGCTGCTTTTGAACGAGTAATGTTTGAGTTTCGATGTGCTGCTTACTCAATTGAGTGTCCTTCAGTAGCAAACATATTACTCGCTCATACTGGCAAACGTGGAGGCAGGGGATTAACAGAAGCAGCTGCAGAGATTGCCCGTGCTGCTGCAAGATCATGGCTTGCTCCTCTTCTAGATACTGCTTGTGATCGTCTTGCTTTTGTACTGGAAAATCTTTTTGATCTTGCACTGGAAAGAAATCGTGCCTATGAATCACAAAATGGGAAGAAGCATTGTAGCATGGACGGGTATGTTGGTTTTCACGCTGCTTTAAGGCATGCTTACAATCGTTTTCTGAAGGACCTTGCTAAACAATGCAAGCAACTACTTCGTCACCACCTCGACTCTGTTACAAGCCCATATTCACTTGTTTGCTACGAGAATGATTTTGAAGGAGGCTCTCTCTCAAATGCATCATCTTTTCAGAAAATTAATCGGGCTTCTGCTGGTTTGTTTTCCTTTGAATTATCTGAATGTGGGACAGATTCTCATGACGAAACAATAAAGGATCAGGAGAACAGACCTCCAGAAAAAAACGTACAGCAGATAACACCAGGAAAAGGTAAAGAATCTAGAGAAGCCCTTCGAGAATGCCAAATGACTGTTCCTGAGACTCCTTCACCAGAGCAACCTAGTGATGTTGGGTATGCAGTAAAGAAGGAATTTGTGAATGGGGTGGATATTGGAGTTCGAAAAAGGGTTTCAAGAGTGACCAGAAATTCTAGTCGGATCGGTGGTCAAGATGGCGGCGGAACTTTGTTTGGTAATGATGATGGCAGTTCCAGATGTAGCTCAGCCTACACAGAAATTTGCTCATCGGCAGCGCAACATTTTGCTAGGATTCGTGAAGTTCTCATTGAGCGAAGTGTGATTCGAGAAAAACTTGTAGTGGCACTTTGTTTGGAATTATTTGCCGTGAATGACGAGAAGTTCACAGACATGTTCGTAGCTCCAGGTGCTATTGAGGTACTTCAGAATGAAAGACAGTCTCTCCAAAAGCGCCAAAAGATACTACAAACATGTTTGAATGAGTTCAAAACTGTAGCTCAATCACTTTGTTGA 2418 45.0 MASSNSFFTTPTKTPSEKSSRKTHNSSRMDASESRSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQDEDSEEYGNPVVLASAIADIIKSRTEALLKKTKTAVSNIPIVMRAEYAHCPNLTIIDTPGFVLKARKGEPENTPQEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDSIREIDPAFRRTIVVVSKFDNRLKEFGDRWEVDKYLSASGYLGDNTHPFFVALPKDRNTVSNDEFRRQISQVDSEVLRHLRDGVKGGFDEEKFRSHIGFGCLREYLESELQKRYKEAAPATLALLEQRCGEVASELCRMESKIQATSDIAHLRKYAMLYTASISNHVSALIEGAADPAPEQWGKTTLEEQSGSGIGSWPGVTSEVKPANSSLRLYGGAAFERVMFEFRCAAYSIECPSVANILLAHTGKRGGRGLTEAAAEIARAAARSWLAPLLDTACDRLAFVLENLFDLALERNRAYESQNGKKHCSMDGYVGFHAALRHAYNRFLKDLAKQCKQLLRHHLDSVTSPYSLVCYENDFEGGSLSNASSFQKINRASAGLFSFELSECGTDSHDETIKDQENRPPEKNVQQITPGKGKESREALRECQMTVPETPSPEQPSDVGYAVKKEFVNGVDIGVRKRVSRVTRNSSRIGGQDGGGTLFGNDDGSSRCSSAYTEICSSAAQHFARIREVLIERSVIREKLVVALCLELFAVNDEKFTDMFVAPGAIEVLQNERQSLQKRQKILQTCLNEFKTVAQSLC 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8767247 8771451 + CmaCh01G012100.1 Cma01g01210 286903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01210 805 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 54 341 IPR030381 GO:0005525
Cma01g01210 805 PANTHER DYNAMIN 34 803 IPR022812 -
Cma01g01210 805 MobiDBLite consensus disorder prediction 1 35 - -
Cma01g01210 805 PANTHER DYNAMIN-LIKE PROTEIN C 34 803 - -
Cma01g01210 805 MobiDBLite consensus disorder prediction 1 16 - -
Cma01g01210 805 Gene3D - 24 394 IPR027417 -
Cma01g01210 805 MobiDBLite consensus disorder prediction 614 643 - -
Cma01g01210 805 SMART dynamin_3 34 268 IPR001401 GO:0003924|GO:0005525
Cma01g01210 805 MobiDBLite consensus disorder prediction 17 35 - -
Cma01g01210 805 Pfam Dynamin family 60 240 IPR045063 -
Cma01g01210 805 PRINTS Dynamin signature 229 245 IPR022812 -
Cma01g01210 805 PRINTS Dynamin signature 57 75 IPR022812 -
Cma01g01210 805 PRINTS Dynamin signature 160 177 IPR022812 -
Cma01g01210 805 PRINTS Dynamin signature 82 99 IPR022812 -
Cma01g01210 805 MobiDBLite consensus disorder prediction 614 628 - -
Cma01g01210 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 349 IPR027417 -
Cma01g01210 805 CDD DLP_1 55 341 IPR001401 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01210 - - - bhj:120085297 1451.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01210 Cma-Chr1:8767247 Cma19g00438 Cma-Chr19:5351319 1.30E-21 dispersed
Cma01g01210 Cma-Chr1:8767247 Cma11g01620 Cma-Chr11:10656806 1.30E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g203 . . . . . . . . . . Cma01g01210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01264 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01210 Cma_Chr01 FPKM 2.90767 2.893141 0.63326 0.549801 6.92666 6.355274 6.847156 0.0 0.0 0.0