Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01214 ATGGTGGGCTCAGGATCATCAGACAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGCGTCTGTCTCAGTTCAGACTGGACTTACTCTGTTTTCTGGACCATCCGCCCTCGTCCAAGGGTCAGAGGAGGCAATGGATGCAAAGTTGGGGACGACAATGGCAGCTTGATGTTAATGTGGGAAGATGGGTTTTGCCGAGGGAGAGCTGCAGAGTGCTTGGAGGAGATTGATGGGGATGATCCTGTTAGAAAGGCCTTCAGCAAAATGTCCATTCAATTATATAATTATGGAGAAGGGCTGATGGGGAAAGTTGCATCAGATAAGTGCCATAAATGGGTTTTCAAAGAACCTACAGAATGCGAGCCAAACATTTCAAATTACTGGCAAAGTTCATTTGATGCTCTTCCTCCTGAGTGGACTGATCAGTTTGATTCTGGAATTCAGACCATTGCTGTTATTCAAGCTGGACATGGCCTCCTCCAGCTTGGTTCCTGCAAGACTATACCAGAAGATCTGCATTTTGTGCTGAGAATGAGGCATACTTTTGAATCTATTGGGTACCGATCTGGTTTTTATTTGAATCAACTCTTTTCTTCAAATAGAAACTCATCTTCTTCTCCAATGGCTTCAAAGCAATCAGCCATTCCCCTTCACCCTCCTCCCAATCTCCTCAATTGGGCACAAAGGCCAATTCCATCTCCTCTAACTTCTCTGCTTCCTTCACCCAATTTCCACACTTCGAATAGGCTCAGTTACCCGCAGTCGAAAGACGAGACGCACATGTTTCTGTTGCCACATTCCTCCGAGGCTCAAATGGAAGACGTGATGGGAGATCATGACAATGATATCAAATGGCCTAATGGGTTGTCCTTGTTCAATGCTCTCACGGGACGAGCCGATGATGCTAAGCTTTTGTTTAATCCGGAGAGCTTAGGAACCAAACCTGATCACACTCATCTCCCTTTGATTCATGAACCGAATAGCGCGAACCCGAACTCGGATCCTATGCACAACACGAATGGAGGTAACCCAAACGAGTTCTTGAGCTTAGACAGCCAATCTGAGAGTGCTAGGAAGATGGAAAACAAGTTCAAGAGAAGCTTTACCTTGCCTGCAAGAATGAGTTCATCTTCATCTTCGACTTCGCTCGACCACCATCCGCATCAATCAGTCGAGTATCGTAACTCGGAGCAGGCGGGTATGTACCCGGACATAATGGAGACATACTTGGAATGA 1251 46.44 MVGSGSSDRSKEAVGMMALHEALRSVCLSSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRAAECLEEIDGDDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFDSGIQTIAVIQAGHGLLQLGSCKTIPEDLHFVLRMRHTFESIGYRSGFYLNQLFSSNRNSSSSPMASKQSAIPLHPPPNLLNWAQRPIPSPLTSLLPSPNFHTSNRLSYPQSKDETHMFLLPHSSEAQMEDVMGDHDNDIKWPNGLSLFNALTGRADDAKLLFNPESLGTKPDHTHLPLIHEPNSANPNSDPMHNTNGGNPNEFLSLDSQSESARKMENKFKRSFTLPARMSSSSSSTSLDHHPHQSVEYRNSEQAGMYPDIMETYLE 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8798553 8801463 - CmaCh01G012140.1 Cma01g01214 286907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01214 416 PANTHER GB|AAF34833.1 1 416 IPR044170 -
Cma01g01214 416 MobiDBLite consensus disorder prediction 331 416 - -
Cma01g01214 416 MobiDBLite consensus disorder prediction 331 360 - -
Cma01g01214 416 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 88 187 IPR025610 -
Cma01g01214 416 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 76 IPR025610 -
Cma01g01214 416 PANTHER GB|AAF34833.1 1 416 - -
Cma01g01214 416 MobiDBLite consensus disorder prediction 374 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01214 - - - csv:101214651 782.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01214 Cma09g00852 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01214 Cma-Chr1:8798553 Cma04g01583 Cma-Chr4:8017680 1.42E-35 dispersed
Cma01g01214 Cma-Chr1:8798553 Cma09g00852 Cma-Chr9:4180695 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g190 . . . Bda09g00523 Bpe09g00241 . . Bma13g00941 . . Cma01g01214 Cma09g00852 Car01g01038 Car09g00766 Sed04g2409 Cpe06g00679 Cpe02g00696 Bhi09g03447 Tan01g4378 Cmetu07g1164 . Hepe01g1399 Mch11g1052 . Cla11g01747 Cam11g1815 Cec11g1835 Cco11g1841 Clacu11g1975 Cmu11g1785 Cre11g2192 . . Cone14ag1057 Cone15ag1049 Lsi04g02057 Csa04g02328 Chy07g00060 Cme07g00581 . Blo10g00751 . Bda12g00834 . . . . . Cmo01g01270 Cmo09g00845 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004966 2 1 2 3 2 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 2 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01214 Cma_Chr01 FPKM 42.272606 41.905819 14.807302 14.947731 8.828141 10.314396 10.21302 64.21756 67.508385 66.631233