Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01216 ATGTCTGACATTGCGAGTGTAGCAGAGGCGGTCGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTATACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTCGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTATTATGGTTCTTATCTCCACCAGACGAAGTTATGGATAATAATGGAATATATGGCTGGGGGCTCTGTTGCAGATCTGCTGCAAACCGGGCCACCCCTTGATGAAATGTCAATGGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTACTGAGCGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTTATTCAGAATTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGCGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAACACCTGCTGAGAGGCCCAGTGCCAAAGAGCTTCTGAAGCATCGGTTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGATGTAGAGACACCAACTAATGGTCCTAGAGGTATGGGTGAAATGGACACGGTGAAAGTATCAAGAAATTTAAGAGAAGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCTAAGAATGCGGGATGGGACTTTAGCATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAAAACCACCTCAAGTTGGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCCCCTAGTAGAGTTGCAGAGAGCGGTAACTGGCTAGCTGCATCTGGAAATGCACCAAGTGACATAGCAGAAAGCACTAGAGATTCATACATTACGGGGAATGCTAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACTATTGTGATTCGGCCTCCCAGGGGATCTAATGCATCTACTCAATTTCATAATGAAAACAATCCGTCTGGAAGTGCACAAGCATGTTTTGAGGACACATCCCTTAGTGGTACTATTGTTATGCGAGGTGAACGTGATGATTCTGATTCTCCTCGGACTCCTAAATCCAGATTGGGAATTCAAGAAAAAACTTCAAGTTTGTCTCCTGAAGATAGTGCATTTAACCTTGCGGAGGCAAAGGCTGCAATTCAAGCAGCAGGATTGAAGAGAGCTAATGCAAGGGAAAGATCAGCTCGCCCTATACACAGCGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCATGAATTCTTTGATGCACCAAGAGCATTGCCAAAACCTTCTTTATCAAGTGATAATGAAGAATTTGCAAAAATAGCCTCGGGTTCTGCACCTTTATCGATGTTGTTTATGCCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGCACTGTAATTAATGCACTTATAAATATGGAACGCGTAAAACCTGGATCATGTGAAGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCTGAGGAATCTTCACTGAAAAATTTACAAGACTTGGCCACTCGCATATTCAACAAGGCAAAGACAGTTCCTGAAGATACACAAGATGTTGCCGATTCTGATAGCAGCAAAAAGCCATCGAACAAGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTATCAAGGGATCTGAGTCCAGCTTGA 2082 42.7 MSDIASVAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQTGPPLDEMSMACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKTPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEDVETPTNGPRGMGEMDTVKVSRNLREETVRASNQSKTPKNAGWDFSIGGPHSTGTVRSVKPPQVGERKPEIPYGQAAPSRVAESGNWLAASGNAPSDIAESTRDSYITGNASEDEELSVSGSGTIVIRPPRGSNASTQFHNENNPSGSAQACFEDTSLSGTIVMRGERDDSDSPRTPKSRLGIQEKTSSLSPEDSAFNLAEAKAAIQAAGLKRANARERSARPIHSDRKENRRTEQTVSSSDSSRHSHEFFDAPRALPKPSLSSDNEEFAKIASGSAPLSMLFMPSLKEVVADDSEGSPSRTVINALINMERVKPGSCEVLVTKLLQKLASSEESSLKNLQDLATRIFNKAKTVPEDTQDVADSDSSKKPSNKELHSNSNLSSLARFLLSRWQGQVSRDLSPA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8808292 8823920 + CmaCh01G012160.1 Cma01g01216 286909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01216 693 MobiDBLite consensus disorder prediction 400 442 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 317 369 - -
Cma01g01216 693 Coils Coil 489 509 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 317 331 - -
Cma01g01216 693 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 691 - -
Cma01g01216 693 Gene3D Transferase(Phosphotransferase) domain 1 12 299 - -
Cma01g01216 693 CDD STKc_MST3_like 14 287 - -
Cma01g01216 693 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cma01g01216 693 MobiDBLite consensus disorder prediction 645 668 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 417 442 - -
Cma01g01216 693 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01216 693 MobiDBLite consensus disorder prediction 505 526 - -
Cma01g01216 693 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 691 - -
Cma01g01216 693 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01216 693 SUPERFAMILY Protein kinase-like (PK-like) 13 316 IPR011009 -
Cma01g01216 693 MobiDBLite consensus disorder prediction 500 553 - -
Cma01g01216 693 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01216 693 MobiDBLite consensus disorder prediction 455 483 - -
Cma01g01216 693 Coils Coil 41 68 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 646 662 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 467 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01216 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1181.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01216 Cma09g00851 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01216 Cma-Chr1:8808292 Cma15g00341 Cma-Chr15:1575235 2.64E-70 dispersed
Cma18g01102 Cma-Chr18:9013246 Cma01g01216 Cma-Chr1:8808292 5.92E-80 transposed
Cma01g01216 Cma-Chr1:8808292 Cma09g00851 Cma-Chr9:4166682 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g01216 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 61.2 4.1e-217 751.9
Cma09g00851 CST 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 60.4 1.7e-215 746.5
Cma18g01102 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.7 1.2e-67 255.4
Cma01g01216 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 63.9 5.1e-228 788.1
Cma09g00851 CST 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 62.7 3.1e-225 778.9
Cma18g01102 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.6e-67 255.0
Cma18g01102 . 4 843 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 4.7e-241 831.6
Cma01g01216 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 8.2e-68 256.1
Cma09g00851 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 9.1e-67 252.7
Cma04g02707 CST 29 692 MAP Kinase Kinase Kinase Kinase AT5G14720 65.1 1.5e-248 856.3
Cma15g00341 CST 1 699 MAP Kinase Kinase Kinase Kinase AT5G14720 63.9 4.3e-248 854.7
Cma06g00589 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.8e-244 842.8
Cma16g01228 CST 637 1378 MAP Kinase Kinase Kinase Kinase AT4G24100 61.4 1.2e-240 830.1
Cma16g01228 CST 641 1379 MAP Kinase Kinase Kinase Kinase AT4G10730 61.9 1.6e-242 836.3
Cma06g00589 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.2 3.1e-241 832.0
Cma01g00193 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 51.0 1.9e-133 473.8
Cma16g01228 CST 635 983 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 5.4e-117 419.1
Cma06g00589 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 3.5e-116 416.4
Cma01g00193 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.4 1.8e-217 753.1
Cma15g00341 CST 1 327 MAP Kinase Kinase Kinase Kinase AT1G23700 59.4 1.2e-103 374.4
Cma04g02707 CST 25 352 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 1.2e-101 367.9
Cma01g00193 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 7.3e-88 322.0
Cma06g00589 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 1.0e-73 275.0
Cma14g01789 . 401 877 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 4.2e-144 508.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68280 PF00069 Pkinase 5.80E-69 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01216 Cma_Chr01 FPKM 12.250316 13.833247 8.959528 11.324294 13.01543 12.376583 13.058347 10.570541 10.394586 11.893608