Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01216 ATGTCTGACATTGCGAGTGTAGCAGAGGCGGTCGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTATACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTCGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTATTATGGTTCTTATCTCCACCAGACGAAGTTATGGATAATAATGGAATATATGGCTGGGGGCTCTGTTGCAGATCTGCTGCAAACCGGGCCACCCCTTGATGAAATGTCAATGGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTACTGAGCGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTTATTCAGAATTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGCGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAACACCTGCTGAGAGGCCCAGTGCCAAAGAGCTTCTGAAGCATCGGTTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGATGTAGAGACACCAACTAATGGTCCTAGAGGTATGGGTGAAATGGACACGGTGAAAGTATCAAGAAATTTAAGAGAAGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCTAAGAATGCGGGATGGGACTTTAGCATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAAAACCACCTCAAGTTGGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCCCCTAGTAGAGTTGCAGAGAGCGGTAACTGGCTAGCTGCATCTGGAAATGCACCAAGTGACATAGCAGAAAGCACTAGAGATTCATACATTACGGGGAATGCTAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACTATTGTGATTCGGCCTCCCAGGGGATCTAATGCATCTACTCAATTTCATAATGAAAACAATCCGTCTGGAAGTGCACAAGCATGTTTTGAGGACACATCCCTTAGTGGTACTATTGTTATGCGAGGTGAACGTGATGATTCTGATTCTCCTCGGACTCCTAAATCCAGATTGGGAATTCAAGAAAAAACTTCAAGTTTGTCTCCTGAAGATAGTGCATTTAACCTTGCGGAGGCAAAGGCTGCAATTCAAGCAGCAGGATTGAAGAGAGCTAATGCAAGGGAAAGATCAGCTCGCCCTATACACAGCGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCATGAATTCTTTGATGCACCAAGAGCATTGCCAAAACCTTCTTTATCAAGTGATAATGAAGAATTTGCAAAAATAGCCTCGGGTTCTGCACCTTTATCGATGTTGTTTATGCCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGCACTGTAATTAATGCACTTATAAATATGGAACGCGTAAAACCTGGATCATGTGAAGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCTGAGGAATCTTCACTGAAAAATTTACAAGACTTGGCCACTCGCATATTCAACAAGGCAAAGACAGTTCCTGAAGATACACAAGATGTTGCCGATTCTGATAGCAGCAAAAAGCCATCGAACAAGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTATCAAGGGATCTGAGTCCAGCTTGA 2082 42.7 MSDIASVAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQTGPPLDEMSMACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKTPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEDVETPTNGPRGMGEMDTVKVSRNLREETVRASNQSKTPKNAGWDFSIGGPHSTGTVRSVKPPQVGERKPEIPYGQAAPSRVAESGNWLAASGNAPSDIAESTRDSYITGNASEDEELSVSGSGTIVIRPPRGSNASTQFHNENNPSGSAQACFEDTSLSGTIVMRGERDDSDSPRTPKSRLGIQEKTSSLSPEDSAFNLAEAKAAIQAAGLKRANARERSARPIHSDRKENRRTEQTVSSSDSSRHSHEFFDAPRALPKPSLSSDNEEFAKIASGSAPLSMLFMPSLKEVVADDSEGSPSRTVINALINMERVKPGSCEVLVTKLLQKLASSEESSLKNLQDLATRIFNKAKTVPEDTQDVADSDSSKKPSNKELHSNSNLSSLARFLLSRWQGQVSRDLSPA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8808292 8823920 + CmaCh01G012160.1 Cma01g01216 286909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01216 693 MobiDBLite consensus disorder prediction 400 442 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 317 369 - -
Cma01g01216 693 Coils Coil 489 509 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 317 331 - -
Cma01g01216 693 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 691 - -
Cma01g01216 693 Gene3D Transferase(Phosphotransferase) domain 1 12 299 - -
Cma01g01216 693 CDD STKc_MST3_like 14 287 - -
Cma01g01216 693 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cma01g01216 693 MobiDBLite consensus disorder prediction 645 668 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 417 442 - -
Cma01g01216 693 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01216 693 MobiDBLite consensus disorder prediction 505 526 - -
Cma01g01216 693 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 691 - -
Cma01g01216 693 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01216 693 SUPERFAMILY Protein kinase-like (PK-like) 13 316 IPR011009 -
Cma01g01216 693 MobiDBLite consensus disorder prediction 500 553 - -
Cma01g01216 693 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01216 693 MobiDBLite consensus disorder prediction 455 483 - -
Cma01g01216 693 Coils Coil 41 68 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 646 662 - -
Cma01g01216 693 MobiDBLite consensus disorder prediction 467 483 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01216 Cma09g00851 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01216 Cma-Chr1:8808292 Cma15g00341 Cma-Chr15:1575235 2.64E-70 dispersed
Cma18g01102 Cma-Chr18:9013246 Cma01g01216 Cma-Chr1:8808292 5.92E-80 transposed
Cma01g01216 Cma-Chr1:8808292 Cma09g00851 Cma-Chr9:4166682 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68280 PF00069 Pkinase 5.80E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01216 K08838 - csv:101214412 1181.78