Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01217 ATGAGTTTCTCACCCAATCCACTTTCCCTCAGCGTCCCTGACAGTGCTTTCGATTCATGGCTTCGCGATTCCGGCTACCTTGAAATTATCGATCAGCGCACCTCTGACGTCCACCGTCATTCCTCCGCCGCTGCCGCCGCTGCTGCCCCCATCACATCTACCTCCGCCCCCACCACTCCTTTAGCTACTGGTTTCTTCATCTCCCTTTTCTCTCGAATCGTGACCCTTTTCTCCATTTTCACCCTTAACCCCTTTGCCAAGCTCTCTGCTGCGGATTTTTCTGGGCCAGCCCCCTCCTGGACTTCTGGGTTTATTGGGTCTTTTGAGTCGTACTCGTTTCCTTCTTCGCCGGCTCAAGCTCGTCTAAGAGCTCATGAGAATGCTAAACGCTATGCTCGCAATTACGCGTCCCTGTTTGTTCTCTTCTTTGTCTGCACGCTGTACCAGATGCCTGTTGCCCTTCTTGGGTTGATATCATGTATGGCACTTTGGGACGTTGTTAAGTTTTGTTGCAACAGGTGGGGATTAGACAAATATCCTGTTGTTTGGCAGTGTTTGGTTCGCGTTGCTCAGTGTGTGACTGTCATTATCCTTTTATTTTCCAACTTTCAAATAGCAATTTTCTGTGCACTCGGTATTGGGTATACAGGCATGATTTTGCACGCTGCATTTCGGAAGCTGACTCTCGCCAAGCCCCCATCTACTGGGAGTCAAAAATAG 720 49.58 MSFSPNPLSLSVPDSAFDSWLRDSGYLEIIDQRTSDVHRHSSAAAAAAAPITSTSAPTTPLATGFFISLFSRIVTLFSIFTLNPFAKLSAADFSGPAPSWTSGFIGSFESYSFPSSPAQARLRAHENAKRYARNYASLFVLFFVCTLYQMPVALLGLISCMALWDVVKFCCNRWGLDKYPVVWQCLVRVAQCVTVIILLFSNFQIAIFCALGIGYTGMILHAAFRKLTLAKPPSTGSQK 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8824170 8826967 - CmaCh01G012170.1 Cma01g01217 286910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01217 239 Pfam PRA1 family protein 104 226 IPR004895 -
Cma01g01217 239 PANTHER PRA1 FAMILY PROTEIN H 1 233 - -
Cma01g01217 239 PANTHER PRENYLATED RAB ACCEPTOR 1-RELATED 1 233 IPR004895 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01217 - - - cmax:111480937 464.151
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01217 Cma09g00850 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01217 Cma-Chr1:8824170 Cma09g00850 Cma-Chr9:4163141 2.91E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g188 . . . . . . . . . . Cma01g01217 Cma09g00850 Car01g01041 Car09g00763 Sed04g2412 Cpe06g00677 Cpe02g00694 Bhi09g03451 Tan01g4376 Cmetu07g0468 . Hepe01g1401 Mch11g1050 . Cla11g01745 Cam11g1813 Cec11g1833 Cco11g1839 Clacu11g1973 Cmu11g1783 Cre11g2190 Cone6ag0162 Cone9ag0188 . . Lsi04g02054 Csa04g02326 Chy07g00058 Cme07g00579 . . . . Bpe11g00464 . . . . Cmo01g01272 Cmo09g00843 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009640 1 1 0 0 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 0 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01217 Cma_Chr01 FPKM 7.908072 7.503057 3.266661 4.565654 5.992347 4.849782 5.374179 3.849421 4.232072 4.432785