Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01218 ATGGGAGTACAACCAGCAATGAGAGAGAAATCGATAGGTGTAAGGGCAGGTAGTGATCATCAGAATGAGGTTGAGGATGTCTGTTATGTTGAAAATAACTTGAGACGACTAAGATCTGTAATCGTTGTAGTAGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACGACAAGAAAACGTCACACATCAACCTGATCATGACCACCCTTCTTTTGGGGATATGGACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAGGATGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGTAAACACCGACGACACAAACTATATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACTTAAGAAAGTACAAACGGGTGCTCCCAAGGAATGTGGAAACTCCTGCTAATTGCGAAGTTGACAAAAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTCGGTTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAAATGGTAACAGGTTCTCTAGACAAGGTGGAGGGAATGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACGTATGATCCTGTCTGTTCTTCTCAGCGCCTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGCAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGGATTTGCCAGAAGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGCATCTGCCTCTCAGGAACCTATCCAAACAAAGCCATCTAAATCCGACATGTGCGACGATGAAACCGCTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTTGGATCTCCACCTCACAAGCCTTCTTCTTCTTCTTCCGTTAATTCTATTTCAGGAGAAAATCTCTTGAACGAGTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACCATGTCGGTAAAGCGGGGTGGTGAAATGGTGCAGGTGAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGGAGGCAACTCAAGCGGTGA 1239 42.45 MGVQPAMREKSIGVRAGSDHQNEVEDVCYVENNLRRLRSVIVVVGEEDKLETFDGNERQENVTHQPDHDHPSFGDMDRNDGMSNRELDNLISEEAPVIITDNRNSIVVKDDGVQNEGSNNNHGGSTHDHPLYERKNGCSVNTDDTNYIDLESILRQRALENLRKYKRVLPRNVETPANCEVDKSNDAKQLDSPVSKSVHVTSPRDEAGINGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVCSSQRLGKISNGSNDMNELKQHISSVDQEVVNDRICQKADADICPTTNRSNLASASQEPIQTKPSKSDMCDDETAQTQTQMRNNDVQNIGDGFGSPPHKPSSSSSVNSISGENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLRRQLKR 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8827990 8829744 - CmaCh01G012180.1 Cma01g01218 286911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01218 412 MobiDBLite consensus disorder prediction 334 359 - -
Cma01g01218 412 MobiDBLite consensus disorder prediction 294 313 - -
Cma01g01218 412 MobiDBLite consensus disorder prediction 364 383 - -
Cma01g01218 412 MobiDBLite consensus disorder prediction 52 79 - -
Cma01g01218 412 MobiDBLite consensus disorder prediction 112 133 - -
Cma01g01218 412 MobiDBLite consensus disorder prediction 112 126 - -
Cma01g01218 412 MobiDBLite consensus disorder prediction 187 222 - -
Cma01g01218 412 MobiDBLite consensus disorder prediction 294 320 - -
Cma01g01218 412 PANTHER TRANSCRIPTIONAL REGULATOR ATRX-LIKE PROTEIN 19 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01218 - - - csv:101205593 510.375
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01218 Cma09g00848 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01218 Cma-Chr1:8827990 Cma09g00848 Cma-Chr9:4151087 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g186 . . . . . . . . . . Cma01g01218 Cma09g00848 Car01g01042 Car09g00761 . Cpe06g00676 Cpe02g00693 Bhi09g03455 . . . Hepe01g1403 . . Cla11g01743 Cam11g1811 Cec11g1831 Cco11g1837 Clacu11g1971 Cmu11g1781 Cre11g2188 Cone6ag0164 . . . Lsi04g02052 Csa04g02324 Chy07g00056 Cme07g00577 . . . . . . . . . Cmo01g01273 Cmo09g00841 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005837 1 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01218 Cma_Chr01 FPKM 18.930601 18.786913 17.726915 17.983351 16.271526 15.139165 20.132238 16.798092 18.749605 18.220976